Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0861 ATGCACCTTTTCTCAAAACCACCAATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTACTGTCCTGGAACCTGGGAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCCGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAGAGGTTGAGAGCAGAGAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTAA 741 47.64 MHLFSKPPMDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERFLELATVLEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIKELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11349305 11352164 + CaPI482276_02g008610.1 Cam02g0861 120603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0861 246 CDD bZIP 150 182 - -
Cam02g0861 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 160 IPR036638 GO:0046983(InterPro)
Cam02g0861 246 Gene3D - 87 160 IPR036638 GO:0046983(InterPro)
Cam02g0861 246 Coils Coil 132 187 - -
Cam02g0861 246 FunFam Transcription factor bHLH34 75 133 - -
Cam02g0861 246 Pfam Helix-loop-helix DNA-binding domain 87 136 IPR011598 GO:0046983(InterPro)
Cam02g0861 246 CDD bHLH_AtILR3_like 89 164 - -
Cam02g0861 246 MobiDBLite consensus disorder prediction 76 96 - -
Cam02g0861 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983(InterPro)
Cam02g0861 246 PANTHER BHLH TRANSCRIPTION FACTOR 17 246 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cam02g0861 246 SMART finulus 90 141 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0861 Cam-Chr2:11349305 Cam05g1646 Cam-Chr5:24234879 2.30E-55 dispersed
Cam02g0861 Cam-Chr2:11349305 Cam10g0535 Cam-Chr10:7883624 1.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51470 PF00010 HLH 4.50E-11 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0861 - - - 0.0