Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0887 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCACAAGGTGCCTACTGAGGATGTCTTTAAGCTCCAAGTTCTCTACCACTAACGGGAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAGCATCTGTGTTTGTTAAATTCAACCGGAAAATGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTCGAGCAGTTGGTTTTCCTTGCGTTCCTATAATGTGAATAGTGGAACAAAACAGAAGCCCTCAAAGTTGTTCGACGAAGAAACTCGAACTTTGCTGCAGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGACTCAGATCGGATGTCATCCACTGGGTGCGCCAATGATTTTGGATCTGACACATCACAGTTGAATGGAATTGCCTGTGCCCTAAGGTCACTGTACTGGGAGCAAGATTTGTACAAGCAGTATGTAGGGGCTGAAGAAAGTGAAGATACCAATATTGGGGAGTGTCCAATTCGAACTGAGAAGATCCCTGGAAATTCTGGCCAATTATTCTCTGATGACATAACTGTTCCATTTGCTACAGACTTATCCGCCTCGTTACTCTCTACTGGAAATCAACTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTAAGATGCCTTTTAAGAAAGCACTGGAAGAATTTCTGTAGTTTCATGATTGGATGTTTTTGGGTCCTCCTTGGAGTGATAGCGTTCCAGAAAATATCTGGCTTCCATCTAAAATTGTGGAACAAGAAACATCCAAAGCCAAATCAGCCATTAGTTCATCAACAATGGGTTTTACTACGGAGAAAGCAACATCAACAGGTCAAAGAGTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTAGTTGGAATCGTTGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCTATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGAAAACATTTGGTGAATACACAGAAAGAACAGCCTTTGAAAGGCCCCTGACCAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCATTTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGAAAATTTGGAACCTGCACCAATTCGAGATGAATATGCACCTGTCATATTCTCTCAAGAAACGGTAGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATCTTGCGAGCTAGAGCTTCTGGAAAGGGTGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAATACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCCTCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACCGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCTTTAAGAAGGCACGAGATGCACTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACCGCTATCAATTCATCTGTAGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTGATGCAGCTATAAATCGGATTGCAAAAGTGGAGAATGACTATCTCGAGACGAGGGGGCTTAAAAGTCGCGCCGAAGCTGCTGATGTAGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAACTACTGATGGACACTAACCTTGATCCAAATCAACTGGATTTTGCCTGGACTGCTCACGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCAATCTGCGTGCTATAGTTGATAATGTGCTCTCACCTTTTTCACTCAAATCTAATGACAAGGGAATTGAGTTGGCTGTTTATGTCTCGGATTTGGTGCCTGAAATTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCACTCAAGTTTACTGATAAAGAGGGACACATACTAGTCTCAGTGCATCTGGCTGATGAAGTAAGAGGCCCAGTTGATTTCATGGACATTGTGCTTAAACAAGGCTCATATGTAAATGGAGATACATCAAACAATAGCTATACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAAGACTTCAAAAAGTTCAGCAGGACGAATGTGGTGGAGGAACCCAAAACAATTAGAATACTCGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCAAGACGCACAAAACCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATAGTGGTACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTCGTGTAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTTGGAATACCAGGCGGCCACAGTATGATGTGGATATTGGAGAGTTCCAGGGGCTAAAAGCATTAATAATCGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAACTGTGGGTACAGAGTCTGCTTATCAATATCTATCCAATACCTCCAACACAAGCTCATCGACACAATTGGCCATGATTCTTATAGACAGAGACATTTGGGAGAAGGAAGTGGGTCCTAAGTTCGATCTTTTGTTTAAAGAGCATGTGGATAAAAGTGTGACAAAGTTCTTTCTCTTGGGAACCCCCAAAAGCTCCAATGAGCAATATGAACTTGAATCTTCTGGTCATGTAAATAATGTGTTAAGTAAACCTCTTCAGTTAGACGTGTTGGTCAGTTGCTTCCGTGAAGCCTTCAGGATTGAGAAGAGGAATCAAGTGATTATTAAGAAACCATCCACTCTTAGGAATCTGCTGAAAGAAAAGCATATCTTGGTTGTGGATGACAATGCGGTAAACAGAAGGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCCATTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAATCCTCCACACAACTTTGATGCTTGCTTCATGGACCTACAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGAGGTGAACGTGAAAATTGCATCTGGAGAAGTGTCAACTGAGGATAATAAAGTCCATTGGCACACGCCAATATTTGCTATGACGGCGGATTTAGTTCAGGCTATGAATGAGGAGTGCCTGAAGTGTGGGATGGATGGTTATGTTGCTAAGCCATTTGAAGAGGAGCAACTTTATTCAGCTCTATCAGATGGTGGATGGAGTGAATCTGGTCACGTCCTTCTCATCTATTTAATTTGTGGAATGACAACCATGGTTAGGTAG 3819 42.26 MWRGCSGGAGVFLKLTRCLLRMSLSSKFSTTNGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWIFAVVIVSSSWFSLRSYNVNSGTKQKPSKLFDEETRTLLQHFNVSKNQLQALASLLSDSDRMSSTGCANDFGSDTSQLNGIACALRSLYWEQDLYKQYVGAEESEDTNIGECPIRTEKIPGNSGQLFSDDITVPFATDLSASLLSTGNQLCGKIIEQAGVLRCLLRKHWKNFCSFMIGCFWVLLGVIAFQKISGFHLKLWNKKHPKPNQPLVHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIFIVVGIVGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEMMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFDAAINRIAKVENDYLETRGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDPNQLDFAWTAHESGKDLISLINKVLDQAKIESGRLELESVPFNLRAIVDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSLKFTDKEGHILVSVHLADEVRGPVDFMDIVLKQGSYVNGDTSNNSYTTFSGLPVVDRWKSWEDFKKFSRTNVVEEPKTIRILVTVEDTGVGIPQDAQNRIFTPFMQADSSTSRTYSGTGIGLSISKRLVDLMDGEIGFVSEPRVGSTFSFTVSFQKGEISFWNTRRPQYDVDIGEFQGLKALIIDNSCIRAEVTRYHLQRLGISVDITVGTESAYQYLSNTSNTSSSTQLAMILIDRDIWEKEVGPKFDLLFKEHVDKSVTKFFLLGTPKSSNEQYELESSGHVNNVLSKPLQLDVLVSCFREAFRIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNRRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESEVNVKIASGEVSTEDNKVHWHTPIFAMTADLVQAMNEECLKCGMDGYVAKPFEEEQLYSALSDGGWSESGHVLLIYLICGMTTMVR 1272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12113436 12122148 - CaPI482276_02g008870.1 Cam02g0887 120629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0887 1272 PANTHER TWO-COMPONENT HISTIDINE KINASE 301 1248 IPR050956 -
Cam02g0887 1272 SUPERFAMILY CheY-like 1113 1248 IPR011006 -
Cam02g0887 1272 FunFam Histidine kinase 4 631 722 - -
Cam02g0887 1272 Gene3D - 723 945 IPR036890 -
Cam02g0887 1272 SMART CHASE_2 374 573 IPR006189 -
Cam02g0887 1272 SMART HKATPase_4 771 943 IPR003594 -
Cam02g0887 1272 SMART REC_2 1115 1247 IPR001789 GO:0000160(InterPro)
Cam02g0887 1272 SUPERFAMILY CheY-like 962 1093 IPR011006 -
Cam02g0887 1272 Gene3D - 325 377 - -
Cam02g0887 1272 Gene3D - 85 126 - -
Cam02g0887 1272 Gene3D CHASE domain 378 605 IPR042240 -
Cam02g0887 1272 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0887 1272 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0887 1272 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0887 1272 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0887 1272 Pfam CHASE domain 377 571 IPR006189 -
Cam02g0887 1272 ProSiteProfiles CHASE domain profile. 374 598 IPR006189 -
Cam02g0887 1272 ProSiteProfiles Response regulatory domain profile. 1116 1251 IPR001789 GO:0000160(InterPro)
Cam02g0887 1272 Pfam His Kinase A (phospho-acceptor) domain 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0887 1272 CDD REC_hyHK_CKI1_RcsC-like 1117 1247 - -
Cam02g0887 1272 Gene3D - 628 722 - -
Cam02g0887 1272 Pfam Response regulator receiver domain 1117 1200 IPR001789 GO:0000160(InterPro)
Cam02g0887 1272 Gene3D - 1090 1249 - -
Cam02g0887 1272 SMART HisKA_10 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0887 1272 CDD HATPase_EvgS-ArcB-TorS-like 776 939 - -
Cam02g0887 1272 ProSiteProfiles Histidine kinase domain profile. 666 943 IPR005467 -
Cam02g0887 1272 CDD HisKA 659 720 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0887 1272 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 647 725 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0887 1272 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 867 941 IPR003594 -
Cam02g0887 1272 FunFam Histidine kinase 4 378 605 - -
Cam02g0887 1272 ProSiteProfiles Response regulatory domain profile. 967 1092 IPR001789 GO:0000160(InterPro)
Cam02g0887 1272 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 713 939 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0887 Cam-Chr2:12113436 Cam06g0005 Cam-Chr6:1856743 6.50E-295 dispersed
Cam10g0064 Cam-Chr10:2219943 Cam02g0887 Cam-Chr2:12113436 5.90E-38 transposed
Cam11g1028 Cam-Chr11:19412430 Cam02g0887 Cam-Chr2:12113436 1.10E-08 transposed
Cam11g1139 Cam-Chr11:22271442 Cam02g0887 Cam-Chr2:12113436 4.60E-28 transposed
Cam02g0287 Cam-Chr2:3642023 Cam02g0887 Cam-Chr2:12113436 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51473 PF03924 CHASE 2.50E-35 CL0165 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0887 K14489 - csv:101221294 2175.98