Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0964 ATGTTGAAAACATTGCAAATGACCCTCCCACTGTCGCTACGCGATTCTTTTAGCTCAGTGACTGGAGTGTGGTTCGATGGCTCTCGAGGAAAAAAACTCTGCGGTTCAGTGATTCTTAGCTTTGACAAGCAGATCATAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTGGTCCTATTTTGGCTTAAAATCCTCTCCGATCTCCAGCTCTGTGAAAGCTTGAATCAGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGAAGATCCTTCTATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTCTTCCTACGAACTACTCAGAGTGATGCCTACCAAATGACTGCTATGGCAGATTTAATTGACTTTTATGAGTGGAAGGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAAAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCCCAGTGAAATCACAGTCATGCTCAATAAATCCAAGTTGCTCGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAGACATCCTTCAAGGCGTGGTTGTACTTCGTCAACATATTCCTGAATCCAACCAACAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGCTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACGATTCAAGTAGCTGCACGTGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACCTTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAGCAGAAACGACTTAGTTATTCCCACCTGAACCAGGCTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACTGCAGTCAATGGAAGCCACGAAAACATTGAAGGATTCTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGGCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAACAGAGATGTGGTGCGTAACATCGGCGTCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCGACATTGTTCAAAACGAATCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCATTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTGTCTCTAGGCTCTCCAGAAGAGTATGAATCAGCACTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAATTGTTCTTATCAGGGAGGAATGATTTCGGAATGATTGGACAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCACGAGAAGTGGTTTTGTAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAGTCTGAGCCTAACCAGCTTCAGTTGGTCAGCTTCTGGGGTCTGTATCTCTTGTGCGGTGCCTTTTCACTCGTTGCTCTTCTTATATTTTTGCTCCGTATAGTTCGACAATTTGCTCGTTACATACGACAACAGAAGGAATCTTCTCATGCAGAATTGGTGTCATCAAATTCAAACTCAAGCTGGACGCAGGTTATATATAAGTTTATTGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGTATGATAATCAGAATCAGGCTAGCCAATAG 2904 41.7 MLKTLQMTLPLSLRDSFSSVTGVWFDGSRGKKLCGSVILSFDKQIIVVWWTLSENCSELVLFWLKILSDLQLCESLNQPAVVNIGAVFTFDSIIGRVAKVAMEAAVSDVNEDPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNPSEITVMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSIDILQGVVVLRQHIPESNQQTTLWSRLRKMLPEGSRNSSLNVYALSAYDTIQVAARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNLVNRGYEVINIDQTGLRRVGYWSNVTGFTIQSPETLKQKRLSYSHLNQALGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHENIEGFCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNQLQLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKYDNQNQASQ 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14035235 14041455 + CaPI482276_02g009640.1 Cam02g0964 120706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0964 967 CDD GluR_Plant 517 861 - -
Cam02g0964 967 PIRSF IGluLR_plant 53 967 IPR017103 -
Cam02g0964 967 FunFam Glutamate receptor 514 631 - -
Cam02g0964 967 FunFam Glutamate receptor 631 761 - -
Cam02g0964 967 Pfam Ligand-gated ion channel 862 892 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0964 967 CDD PBP1_GABAb_receptor_plant 83 473 IPR044440 -
Cam02g0964 967 Gene3D - 809 868 - -
Cam02g0964 967 FunFam Glutamate receptor 197 353 - -
Cam02g0964 967 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 82 924 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam02g0964 967 Gene3D - 197 471 - -
Cam02g0964 967 Gene3D - 631 763 - -
Cam02g0964 967 Pfam Receptor family ligand binding region 99 456 IPR001828 -
Cam02g0964 967 SMART GluR_14 520 863 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0964 967 Coils Coil 945 965 - -
Cam02g0964 967 FunFam Glutamate receptor 757 865 - -
Cam02g0964 967 SUPERFAMILY Periplasmic binding protein-like I 78 511 IPR028082 -
Cam02g0964 967 Gene3D - 527 630 - -
Cam02g0964 967 SUPERFAMILY Periplasmic binding protein-like II 494 861 - -
Cam02g0964 967 Pfam Bacterial extracellular solute-binding proteins, family 3 540 639 IPR001638 -
Cam02g0964 967 Gene3D - 100 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0964 Cam-Chr2:14035235 Cam11g1903 Cam-Chr11:31544418 3.60E-261 dispersed
Cam02g0964 Cam-Chr2:14035235 Cam02g0965 Cam-Chr2:14091099 5.40E-249 tandem
Cam08g1934 Cam-Chr8:25269149 Cam02g0964 Cam-Chr2:14035235 1.00E-103 transposed
Cam02g0197 Cam-Chr2:2887941 Cam02g0964 Cam-Chr2:14035235 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0964 K05387 - csv:101215715 1670.6