Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0965 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCAGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTAGACGACGTCAATGCTGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGTTCACGTTATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTTCAAATGAATGCAATTGCTGATATGGTAGATTATTTTAAATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAATGATGCCTTAGTGAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGAAATAAGTGACTTGTTGGCTTCGATAAACTTGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAATATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGACAATCTAAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTTGACACCTTTATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCCAAAGTTACGTGAAAACAATGGAAGCATGTTGCAGTTAAAATCCCTCCGAGTGTTTAACGATGGTGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACTGGTGTAAGCGGGCAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCCTAAACATTGGGGGAACTGGTTCACGTAGAATTGGCTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCATCTTAATGCTTCCTCAAATAACCATCTCTATAGTGTCATATGGCCAGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTTTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTATTTGAAGCTGCCATAAACTTGTTACCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAGTCTTGTATATGAGGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACTATTGTAACGAATAGGACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTTTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGTGGTCCGCCAAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACAATGTTCTTTTCTCATAAGGAAAATACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAAAAATCAAGAGGAATATGCTGATGCTCTTAAGCGTGGATCGGGAAATGGTGGGGTTGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACTGATTGCCTATATAGGACAGTTGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTTTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGATGAGCTTGAACCAGGTCGACGTAAGCCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCATGTTTTGTTGCTCTTTCGGTATTCTTCTTTCGAGTATTATTCCAATATCGAAGATTTACCCCAGAAAACCAGCCTGAAGTTGAAGAGATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACTAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGGACACCATTCGCTGCCACTTTTTACCCGTGCTCACACCGTTGCCGTCGGCCTCAACGGCTCAAGCCCCCTCTCTCGTCTCTTCCATCTGAAGGCCGCCCCACCTCGTGTTCACCGGTGCCGCTGCAGCCTTCTTATTCGAACCGAGGTCGAATTTCAAATCTCACTTCCGGCAACTCCACCTCCGTCTTCCCCACCATCGACAACGACTCCACCTGCAACCCACCACGAACAACTCTACCACCTGCACCATTGA 2979 41.83 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFKWREVVAIFVDDDNGRSGISALNDALVKKRAKISYKAAFPPGSSNSEISDLLASINLMESRVYIVHVNPDTGLSIFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDDNLKKNFVSKWRNLKYKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLRENNGSMLQLKSLRVFNDGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKHLNASSNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVFKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNSLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYADALKRGSGNGGVAAIVDELPYVELFLAGTDCLYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVSQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPENQPEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGHHSLPLFTRAHTVAVGLNGSSPLSRLFHLKAAPPRVHRCRCSLLIRTEVEFQISLPATPPPSSPPSTTTPPATHHEQLYHLHH 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14091099 14098882 + CaPI482276_02g009650.1 Cam02g0965 120707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0965 992 FunFam Glutamate receptor 474 590 - -
Cam02g0965 992 Gene3D - 774 827 - -
Cam02g0965 992 Gene3D - 64 408 - -
Cam02g0965 992 Pfam Ligand-gated ion channel 599 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0965 992 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cam02g0965 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cam02g0965 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cam02g0965 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cam02g0965 992 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 888 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam02g0965 992 FunFam Glutamate receptor 716 824 - -
Cam02g0965 992 PIRSF IGluLR_plant 14 921 IPR017103 -
Cam02g0965 992 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cam02g0965 992 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0965 992 CDD GluR_Plant 477 820 - -
Cam02g0965 992 MobiDBLite consensus disorder prediction 963 992 - -
Cam02g0965 992 Pfam Ligated ion channel L-glutamate- and glycine-binding site 500 581 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0965 992 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Cam02g0965 992 Gene3D - 473 588 - -
Cam02g0965 992 FunFam Glutamate receptor 590 720 - -
Cam02g0965 992 Gene3D - 589 721 - -
Cam02g0965 992 FunFam Glutamate receptor 160 320 - -
Cam02g0965 992 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cam02g0965 992 Gene3D - 160 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0197 Cam-Chr2:2887941 Cam02g0965 Cam-Chr2:14091099 1.10E-246 dispersed
Cam02g0965 Cam-Chr2:14091099 Cam11g1903 Cam-Chr11:31544418 4.20E-281 dispersed
Cam02g0965 Cam-Chr2:14091099 Cam02g0967 Cam-Chr2:14142322 0.00E+00 proximal
Cam02g0964 Cam-Chr2:14035235 Cam02g0965 Cam-Chr2:14091099 5.40E-249 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0965 K05387 - csv:101215485 1652.11