Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0967 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCAGCACAGCCTGCAATTTTAGCTGCCTTGGATGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGCGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGCTCATGTCATTTCCCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTACACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTCGTTGCCATTTTTGTAGACGATGATAATGGCAGGAATGGGATCTCAGCACTGAACGATGCCTTGGCGAAGAAGCGAGCAAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTCTTTCAGTATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAATGGCTATGTCTGGATTGCATCAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCATACCCCAGATGGTGATTTAAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGGGTCCAAACTTCAACTCGTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCATGCTCTCGACACATTTATTAAAGAAGGTGGAAATATATCCTTTTCCAACAACCTGAAGTTACGTGGAAACGATGAAAGCATGCTACACTTAAAATCTCTTCGAGTGTTTAACGACGGCAAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCATCTTATGATATCCTAAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTTTATCAACTATTGCACCAGAAAACTTGTATACCAAGACTCTTAATGCCTCCCCTAATAACCATCTCTACAGTGTCATATGGCCGGGTGAAGTAACGGCCATTCCTCGAGGGTGGGTGTTTCCACACGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGACGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAATAAATACGATGCAGTTGTTGGAGACATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTAGTTACTATCGTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGTTATCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTATTTGGATTCTCGAGCACCGAACTAATGAAGAGTTTCGTGGTCCGCCGAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCGACAATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCAATCTTAACGGTACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCAATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAATTGAATATAGCAGCATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCGAGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATTCAGGACAGTTGGACAAGAGTTCACAAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAACCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTATCGCGAACTAAGTGTTCGATGAGCCTAAACCAAGTTGATGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTTCCTGCTTTGTTGCTCTTTCAATATTCTTCTTTCGAGTATTATTCCAATACCGAAGATTCACCCCAGAAATCCAGTTTGAAGTCGAGGAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCCAACTTAAAAGAAAAGCTAGTGATAAAAAACAAGCTAGCCAGAGCTCAGAGGGCCACCCTAATTCATCTCCTTGA 2802 40.22 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIAHVISHVVNELHIPLLSFGATDPALSTQQYQYFVRTTQSDYFQMNAIADMVDYFGWREVVAIFVDDDNGRNGISALNDALAKKRAKISYKAAFPPGSSNSAISDLLVSINLMESRVYIVHVNPDTGLSVFSIAKKLQMMGNGYVWIASDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKNFVSKWRNLKYKKGPNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNNLKLRGNDESMLHLKSLRVFNDGKQLLQTIKRTNFTGVSGKIQFGDDRNLIHPSYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKTLNASPNNHLYSVIWPGEVTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTIVKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVIWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKSQEEYVDALKRGSRNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTTILQLSENGDLQKIHDKWLSRTKCSMSLNQVDVNKLSLSSFWGLFLICGISCFVALSIFFFRVLFQYRRFTPEIQFEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGQLKRKASDKKQASQSSEGHPNSSP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14142322 14147183 + CaPI482276_02g009670.1 Cam02g0967 120709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0967 933 FunFam Glutamate receptor 160 320 - -
Cam02g0967 933 Pfam Bacterial extracellular solute-binding proteins, family 3 536 598 IPR001638 -
Cam02g0967 933 Gene3D - 160 433 - -
Cam02g0967 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cam02g0967 933 Gene3D - 64 408 - -
Cam02g0967 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0967 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cam02g0967 933 CDD GluR_Plant 477 820 - -
Cam02g0967 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 910 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam02g0967 933 FunFam Glutamate receptor 590 720 - -
Cam02g0967 933 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0967 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cam02g0967 933 SUPERFAMILY Periplasmic binding protein-like II 455 821 - -
Cam02g0967 933 MobiDBLite consensus disorder prediction 907 921 - -
Cam02g0967 933 FunFam Glutamate receptor 716 824 - -
Cam02g0967 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cam02g0967 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cam02g0967 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cam02g0967 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cam02g0967 933 FunFam Glutamate receptor 474 590 - -
Cam02g0967 933 Gene3D - 589 717 - -
Cam02g0967 933 Gene3D - 474 588 - -
Cam02g0967 933 MobiDBLite consensus disorder prediction 907 933 - -
Cam02g0967 933 Gene3D - 718 824 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2149 Cam-Chr1:34262611 Cam02g0967 Cam-Chr2:14142322 8.90E-283 dispersed
Cam02g0967 Cam-Chr2:14142322 Cam11g1903 Cam-Chr11:31544418 5.90E-285 dispersed
Cam02g0965 Cam-Chr2:14091099 Cam02g0967 Cam-Chr2:14142322 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0967 K05387 - csv:101215485 1650.18