Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0975 ATGCAATATAATTGGTTTCTGACACCCAATGTAGCTGTTATGTTTGGTAGTTCATATCTTTCAATCCAAACGTTGATGCATTTCTTTCATTTCATGAAATTTATTGGGTTTGACTTTGTTGCTGCTCTTTGGCAGTCAGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTTGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCGAAGGCTGTTACCAAAGCATTAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATTGACAGAGCAAGAATGAACGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATCAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGTTTGTTTGTGTGATCCAACCATCGAAGAATGAACAAGAACACCTTCTTCTGATAAGTTCTTGCCATTTTCCTCCATTTGCTCAATATGGTAACGAATGCAGTGGACCACGTTCGAACAGGAACCGATGCACTCCAGACAGCAAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTCGCAGTGCATCCATGGAAGAAGTAAACTGA 1128 41.93 MQYNWFLTPNVAVMFGSSYLSIQTLMHFFHFMKFIGFDFVAALWQSDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVEKLSGLLIKLKDANEESKAVTKALEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQFVCVIQPSKNEQEHLLLISSCHFPPFAQYGNECSGPRSNRNRCTPDSKELTEAIKKMHDDWHHIAAGHSNHNRPRSASMEEVN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14377334 14380211 + CaPI482276_02g009750.1 Cam02g0975 120717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0975 375 PANTHER SYNTAXIN 80 292 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam02g0975 375 CDD SynN 78 235 IPR006011 GO:0016020(InterPro)
Cam02g0975 375 SMART tSNARE_6 243 310 IPR000727 -
Cam02g0975 375 CDD SNARE_syntaxin1-like 247 292 - -
Cam02g0975 375 Gene3D - 74 279 - -
Cam02g0975 375 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 293 IPR000727 -
Cam02g0975 375 SUPERFAMILY t-snare proteins 75 292 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam02g0975 375 Pfam Syntaxin 81 282 IPR006011 GO:0016020(InterPro)
Cam02g0975 375 SMART SynN_4 73 199 IPR006011 GO:0016020(InterPro)
Cam02g0975 375 Coils Coil 78 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0975 Cam-Chr2:14377334 Cam10g1328 Cam-Chr10:26779823 9.80E-74 dispersed
Cam02g0975 Cam-Chr2:14377334 Cam02g0977 Cam-Chr2:14413903 2.80E-76 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0975 K08486 - csv:101214355 429.483