Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1021 | ATGGAGAGACAATATGGATCAAATAATTTGAGTCCATGTTCCTCCATTTCTAATCGGGTTCGACAAGAAACTGAAGATGTCACTAAAGATTTGAAGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGGCTTTGAGTTGTCATATTGCTCAGTTGAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGAGAGAAATGCCGACCCTGTTATACTTGAAAGATTGGCAAATAAATTGGAACTACGCAAAATTGCAGATTTGGAAGCAGAAACTGTAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTGGCTCCTGATGGTCCTGTTGCGTCGAAGTGTCTGCAACGATGTCAGTCTACAATAATCCCACATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCGAACCACCGGACCTGCCCAAAAACAGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGTATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACGCCGCCCGATCTCGCTAAAGAAATCTCGTCTTTAGTTCACAATCTATCATCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAATAGAGTTTGGATCGCGAATAGTGGAGTCATCCCTCCCTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACAGTCACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCAGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTTTGATTGGATCTCTAAAGGGAATTCCGCCGCTGGTATTACTTCTTCGAGCCGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAATCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTTGCTTTGCTCGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCTGAGATTGGAAACAACTCTTTCATCGAAATTTTGGTTAACATCATAATAGATGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA | 1938 | 42.83 | MERQYGSNNLSPCSSISNRVRQETEDVTKDLKEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSCHIAQLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETVAVQKLVRHRGVPNSESLQQIIDLLCKFKQIAGMDNNVAPDGPVASKCLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKYNYELPKKEVVAGMGDTPPDLAKEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRAGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15556894 | 15560211 | + | CaPI482276_02g010210.1 | Cam02g1021 | 120763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1021 | 645 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cam02g1021 | 645 | FunFam | RING-type E3 ubiquitin transferase | 353 | 644 | - | - | |
Cam02g1021 | 645 | Gene3D | - | 29 | 139 | IPR036537 | GO:0007166(InterPro) | |
Cam02g1021 | 645 | ProSiteProfiles | U-box domain profile. | 270 | 344 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g1021 | 645 | FunFam | RING-type E3 ubiquitin transferase | 27 | 141 | - | - | |
Cam02g1021 | 645 | SMART | arm_5 | 394 | 434 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SMART | arm_5 | 435 | 475 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SMART | arm_5 | 517 | 557 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SMART | arm_5 | 476 | 516 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SMART | arm_5 | 600 | 640 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SMART | arm_5 | 558 | 598 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | Gene3D | - | 359 | 504 | IPR011989 | - | |
Cam02g1021 | 645 | PANTHER | U BOX DOMAIN-CONTAINING | 49 | 640 | - | - | |
Cam02g1021 | 645 | FunFam | RING-type E3 ubiquitin transferase | 269 | 344 | - | - | |
Cam02g1021 | 645 | SUPERFAMILY | ARM repeat | 365 | 639 | IPR016024 | - | |
Cam02g1021 | 645 | Pfam | U-box domain | 271 | 340 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g1021 | 645 | SMART | Ubox_2 | 274 | 337 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g1021 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 394 | 433 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 477 | 515 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 435 | 474 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 517 | 554 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | Coils | Coil | 146 | 166 | - | - | |
Cam02g1021 | 645 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 345 | IPR013083 | - | |
Cam02g1021 | 645 | CDD | MLKL_NTD | 53 | 163 | - | - | |
Cam02g1021 | 645 | CDD | RING-Ubox_PUB | 272 | 324 | IPR045210 | - | |
Cam02g1021 | 645 | Gene3D | - | 505 | 644 | IPR011989 | - | |
Cam02g1021 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 405 | 447 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | SUPERFAMILY | RING/U-box | 271 | 345 | - | - | |
Cam02g1021 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 446 | 488 | IPR000225 | GO:0005515(InterPro) | |
Cam02g1021 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 487 | 529 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1021 | Cam-Chr2:15556894 | Cam03g0158 | Cam-Chr3:2460309 | 1.30E-81 | dispersed | |
Cam02g1021 | Cam-Chr2:15556894 | Cam02g2095 | Cam-Chr2:33809438 | 1.60E-87 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1021 | - | - | - | 0.0 |