Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1060 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACGTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTTTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCAGAGCTTAATGAACCGTCACCTGCCTCTTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGGAAGATGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGACTGAGCTTCATTGCGTTCTTGCCAGCAATCCGTCAAATTGTGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCACCTCCAGATCTACAGAGTTATTCGTTTTACAAATTGGACATGGCTACTCAGTCTATTTGTCAAAGTTTCAAATTAGATCAAAACTTCGAGCAGACAACAGCGGCCAGTAAGGATGATGTGTCTACTTTGAACTGCCATATATTGAACTCACATCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACACAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGATTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGAAGAGCCTTTGAGAGTGGCAATCGAAGGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGTTGATGCAAAGAAGAGTCCAAAAGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAGGATTACGACAAAGACGAATAATAAAAAGCTTGATACTGCAAACATCAACCTTGCTCCGCATCATCAGAATATGACGAACACCAACTGA 1461 43.94 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEEDDATSILAEPKAETELHCVLASNPSNCVQDGFCIPELQQDSFLGFEECKVSPPDLQSYSFYKLDMATQSICQSFKLDQNFEQTTAASKDDVSTLNCHILNSHPEFDYGVLIGASDVGDFSQDTKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRRQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKHVDAKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGRITTKTNNKKLDTANINLAPHHQNMTNTN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16881002 16883447 - CaPI482276_02g010600.1 Cam02g1060 120802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1060 486 Coils Coil 18 38 - -
Cam02g1060 486 PANTHER TRANSCRIPTION FACTOR VOZ1 1 478 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2397 Cam-Chr1:35920066 Cam02g1060 Cam-Chr2:16881002 1.20E-132 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g2397 . 202 649 VOZ-9 Transcription Factor Family AT1G28520 71.6 2.5e-186 648.7
Cam02g1060 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 58.0 2.9e-134 475.7
Cam01g2397 . 202 589 VOZ-9 Transcription Factor Family AT2G42400 51.7 2.1e-102 369.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51485 None None None None Cam TF