Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1069 ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCACCAAAGACGTTGATGGCGACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGCAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGGAGTAATGTACTGCGAAGATCCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGGGTTTCTTCATTATACAGTCATCAATTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTATTACTACAACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1314 41.32 MIEKMADDEFSDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGGVMYCEDPLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQQGFLFNNNGTQYCNSSSTTNPIVVVENGNNEMYTAKRRRTESEIECGSGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17850030 17851533 + CaPI482276_02g010690.1 Cam02g1069 120811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1069 437 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Cam02g1069 437 SMART c2h2final6 133 153 IPR013087 -
Cam02g1069 437 SMART c2h2final6 57 79 IPR013087 -
Cam02g1069 437 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cam02g1069 437 FunFam protein indeterminate-domain 12-like 36 104 - -
Cam02g1069 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cam02g1069 437 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cam02g1069 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 425 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam02g1069 437 MobiDBLite consensus disorder prediction 389 413 - -
Cam02g1069 437 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cam02g1069 437 Gene3D Classic Zinc Finger 91 181 - -
Cam02g1069 437 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Cam02g1069 437 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Cam02g1069 437 Gene3D Classic Zinc Finger 53 80 - -
Cam02g1069 437 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1981 Cam-Chr1:33100665 Cam02g1069 Cam-Chr2:17850030 4.30E-88 dispersed
Cam02g0249 Cam-Chr2:3368607 Cam02g1069 Cam-Chr2:17850030 3.20E-100 dispersed
Cam02g1069 Cam-Chr2:17850030 Cam09g0719 Cam-Chr9:7185356 4.30E-89 dispersed
Cam02g1069 Cam-Chr2:17850030 Cam04g0835 Cam-Chr4:22587034 8.20E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51486 PF00096 zf-C2H2 0.0018 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1069 K25870 - csv:101211656 635.95