Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1103 | TTGAGGAACAATTGCTCCAACCCATCTCTCCAAAGGAGTAACGACAACAAACAAGGCGTTGAAAGGCATTCCCGCGCCGAGATGGGGTCATTAGGCGAGAAAACCATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAACTTTTCTATTGAGGGATCTATCCATAGTTCTACGTTGGGTGGTGGTTCGCAGAAACTTAGTTACAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTTGTCTTCTCTGCTAAAATAAACCTTCTCATGCCTTTTGGACCTTTAGCAATAATAGTCAGCACTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGATATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCTACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATCCGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAGAGAGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCGACACACACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTTGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCGGTTGACGAGGGGGATAATGAAGGGAGTTCTTCTGATGATGAAGAAGCTCCTGAGATTACCATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATCTCCGTCCTCTCCGAATACTTGGTTAATGCAATCGAGGGGGCATCGGTTGCAATGAACATACCAGTAGCATTCATTAGTGTTATCCTACTACCTATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCGACACAGATATCTATGTTTGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCTATGGACTTGAATTTTCAGCTTTTTGAAACCGCCACGCTTTTCATCACGGTCATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGACCCAGCATCAGTTGGTAAGCTTTCACTCCCTTTGCTACAACTGGGAAACTGCAAACAAAATGGAAGCTATTCAATGCCCTACAAAACTAACAGTCTAACCATGAAAATCAAAACTTTTACACAGGAGACAAGACCCGAAAACCTGGTGTATGAAAGGCAAGGGACGACTCAAAGAAGTGAATCTGCCTGCACTAGTACTCTCTTGAAGATGGGATTGACCGAAGCTCGAGGTTCACTCCATTGCTGTATAGTTCTGAATTCAGGCCACAACCTTGTTCAGAAATCATTTTTCCATGTTTTGGGACAACCAATGGCAATAGATGTTTCCTTGATTCTTCCAGTCGTTGGTGCTGATCTTGTTTTATATTTGCAAGCTTTGGCAAATACTCACAACTTAGCAACTAGGAATGCTAGATATTGA | 1776 | 42.0 | LRNNCSNPSLQRSNDNKQGVERHSRAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGSIHSSTLGGGSQKLSYSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSTLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEGDNEGSSSDDEEAPEITMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKLSLPLLQLGNCKQNGSYSMPYKTNSLTMKIKTFTQETRPENLVYERQGTTQRSESACTSTLLKMGLTEARGSLHCCIVLNSGHNLVQKSFFHVLGQPMAIDVSLILPVVGADLVLYLQALANTHNLATRNARY | 591 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20285733 | 20290896 | + | CaPI482276_02g011030.1 | Cam02g1103 | 120845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1103 | 591 | Gene3D | - | 290 | 449 | IPR044880 | - | |
Cam02g1103 | 591 | Gene3D | - | 145 | 285 | IPR044880 | - | |
Cam02g1103 | 591 | FunFam | Vacuolar cation/proton exchanger | 293 | 449 | - | - | |
Cam02g1103 | 591 | FunFam | Vacuolar cation/proton exchanger | 146 | 285 | - | - | |
Cam02g1103 | 591 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cam02g1103 | 591 | Pfam | Sodium/calcium exchanger protein | 305 | 447 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam02g1103 | 591 | Pfam | Sodium/calcium exchanger protein | 116 | 272 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam02g1103 | 591 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cam02g1103 | 591 | NCBIfam | calcium/proton exchanger | 99 | 448 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Cam02g1103 | 591 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 59 | 453 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1103 | Cam-Chr2:20285733 | Cam10g0392 | Cam-Chr10:6250148 | 1.60E-158 | dispersed | |
Cam02g1103 | Cam-Chr2:20285733 | Cam04g0714 | Cam-Chr4:21511717 | 1.30E-93 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1103 | K07300 | - | csv:101215915 | 826.624 |