Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1111 ATGGAGGAGAAGCGAGGTACGAGCAGCAACAAGCCTACCGACAAATGGATGGCATTTGACAGAGAACCAAACACAACAAACTCTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGTGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGGAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCAGTTGAAGCTGCAAATGATTCACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGCAAGAAACCTAGGTTGTCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATTTACTCGTGAGGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGAACGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCACAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAGATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTTCAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTCTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACACAATCAAATTCTTTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCGAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTAATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA 2772 43.65 MEEKRGTSSNKPTDKWMAFDREPNTTNSPGNESKEDRKSWQSSSKRAISTEANIAERVAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDSPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSENAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGSSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20543612 20557028 + CaPI482276_02g011110.1 Cam02g1111 120853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1111 923 SMART serkin_6 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1111 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 228 IPR035965 -
Cam02g1111 923 MobiDBLite consensus disorder prediction 308 334 - -
Cam02g1111 923 FunFam Putative LOV domain-containing protein 129 285 - -
Cam02g1111 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 403 502 IPR035965 -
Cam02g1111 923 Pfam PAS domain 136 232 IPR000014 -
Cam02g1111 923 Pfam PAS domain 410 502 IPR000014 -
Cam02g1111 923 FunFam Putative LOV domain-containing protein 672 887 - -
Cam02g1111 923 SMART pas_2 117 186 IPR000014 -
Cam02g1111 923 SMART pas_2 389 458 IPR000014 -
Cam02g1111 923 Gene3D PAS domain 376 540 - -
Cam02g1111 923 CDD PAS 402 502 IPR000014 -
Cam02g1111 923 ProSiteProfiles PAS repeat profile. 387 460 IPR000014 -
Cam02g1111 923 MobiDBLite consensus disorder prediction 1 18 - -
Cam02g1111 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1111 923 PANTHER FLIPPASE KINASE 1-RELATED 535 894 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam02g1111 923 Pfam Protein kinase domain 591 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1111 923 MobiDBLite consensus disorder prediction 1 48 - -
Cam02g1111 923 ProSitePatterns Protein kinases ATP-binding region signature. 594 617 IPR017441 GO:0005524(InterPro)
Cam02g1111 923 Gene3D Transferase(Phosphotransferase) domain 1 672 891 - -
Cam02g1111 923 ProSiteProfiles PAC domain profile. 189 243 IPR000700 -
Cam02g1111 923 ProSiteProfiles PAS repeat profile. 115 188 IPR000014 -
Cam02g1111 923 CDD PAS 142 231 IPR000014 -
Cam02g1111 923 MobiDBLite consensus disorder prediction 89 109 - -
Cam02g1111 923 SMART pac_2 192 234 IPR001610 -
Cam02g1111 923 SMART pac_2 464 506 IPR001610 -
Cam02g1111 923 ProSiteProfiles PAC domain profile. 461 515 IPR000700 -
Cam02g1111 923 CDD STKc_phototropin_like 586 894 - -
Cam02g1111 923 ProSiteProfiles Protein kinase domain profile. 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1111 923 NCBIfam PAS domain S-box protein 142 232 IPR000014 -
Cam02g1111 923 NCBIfam PAS domain S-box protein 412 502 IPR000014 -
Cam02g1111 923 Gene3D PAS domain 129 299 - -
Cam02g1111 923 FunFam LOV domain-containing protein 587 671 - -
Cam02g1111 923 MobiDBLite consensus disorder prediction 79 109 - -
Cam02g1111 923 Gene3D Phosphorylase Kinase; domain 1 587 671 - -
Cam02g1111 923 FunFam LOV domain-containing protein 376 540 - -
Cam02g1111 923 SUPERFAMILY Protein kinase-like (PK-like) 565 900 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1111 Cam-Chr2:20543612 Cam02g2140 Cam-Chr2:34164485 1.10E-304 dispersed
Cam02g1111 Cam-Chr2:20543612 Cam02g0326 Cam-Chr2:3996590 4.50E-269 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84959 PF00069 Pkinase 2.10E-61 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1111 K20715 - csv:101215355 1738.39