Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1127 ATGTCAAAGCAGAATGGACCCCTGTCGTCTTCTCTAAAACTAAAAGGCAGCCTTCCTCTTCTCCTCAAATTTGTCAAGAGTCTCTACATTCCATCATTGTTGTGTATTGTACCAAAAACCTTCCGAGCCATGAATTTCAAATCTCTCCATTTTCTCCTTTCCATTATAACCTTTTTCTTGTTTCTCTCAATTTCTACTTCTGACAAAGACCCATCTTCTTCCTCTGCAATCATATCAAGGTTCCAACAATACCTTCAGATTAATACCGTCCAACCCAGCCCCAAATACTATGAAGCTGCTGATTTCATCATTTCTCAGGCCAAATCGCTCTCCCTTGAATCTAGGACAATTGAATTCGTCGCGGGCAAGCCTCTGGTTCTCCTCAAATGGCCTGGTTCCAACCCTGATCTCCCCTCCATCCTCCTTAATTCGCATACCGATGTTGTTCCAGCTGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGCAATATCTATGCCAGAGGGTCTCAGGATATGAAGTGCGTTGGGATGCAGTACCTTGAGGCTATTCGGCGTTTGAAGGAATCTGGGTTTGAGCCTCTGCGCTCTGTTTACCTATCTTTTGTTCCGGATGAAGAAATTGGTGGCCATGGCGGTGCTGAGAAATTTGCTGAATCTGATGAGTTCGAGAAATTGAATGTCGCCATTGTGCTTGATGAAGGGTTGCCTTCTCCGGGTGAGAATTATAGGGTGTTTTATGGGGAGAAGAGCCCCTGGTGGTTGGTGATCAAGGCAGTTGGAGCGCCAGGTCATGGAGCTAAGCTTTATGATAACACTGCCTTGGAGAATCTTTTCAAAAGCATTGAGACTGTCAGAAGGTTTAGAGCTTCACAGTTTGATTTGATCAAGTCTGGTTTGAAGACTGAAGGAGATGTTGTCTCTGTCAATATGGTCTTCTTAAAATCTGGCACTCCATCTCCTACTGGCTTTGTCATGAATCTGCAGCCATCTGAAGCTGAGGCTGGTTTTGATGTTCGCCTCCCACCGACTGCAAATCCAGAGTCTCTTGAGAGACGAATTGCAGAGGAATGGGCACCAGCTTCTCGTAATATGACGTTTGAGTTTAAGCAGAAGGAATCTATTTACAACAAGTTTGGGAAACCAGCTCTTACTGCTATTGACAAATCTAACCCATGGTGGAATCTTCTTGAAGAAGCTGTAAGAAATGCCAATGGAAAACTTGCAAACCCAGAAATCTTTCCTGCTTCAACGGATGCCCGATACTTTCGAAATCTTGGCCTTCCTGCAATTGGCTTCTCTCCAATGGCCAACACTCCTATTCTTCTTCATGACCATAATGAGTTTCTGAACCAAGCTGAGTATTTGAAAGGCATTGAGGTGTACGAGTCAATAATCAAGGCTTATGCTTCTTATGACGATGACAAATCGACTGAGAGCTTCAAAGATGAGTTATAA 1476 44.17 MSKQNGPLSSSLKLKGSLPLLLKFVKSLYIPSLLCIVPKTFRAMNFKSLHFLLSIITFFLFLSISTSDKDPSSSSAIISRFQQYLQINTVQPSPKYYEAADFIISQAKSLSLESRTIEFVAGKPLVLLKWPGSNPDLPSILLNSHTDVVPAEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKESGFEPLRSVYLSFVPDEEIGGHGGAEKFAESDEFEKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGAKLYDNTALENLFKSIETVRRFRASQFDLIKSGLKTEGDVVSVNMVFLKSGTPSPTGFVMNLQPSEAEAGFDVRLPPTANPESLERRIAEEWAPASRNMTFEFKQKESIYNKFGKPALTAIDKSNPWWNLLEEAVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIEVYESIIKAYASYDDDKSTESFKDEL 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21153645 21156505 + CaPI482276_02g011270.1 Cam02g1127 120869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1127 491 NCBIfam N-acyl-aliphatic-L-amino acid amidohydrolase 72 477 IPR010159 GO:0004046(InterPro)|GO:0005737(InterPro)|GO:0006520(InterPro)
Cam02g1127 491 SUPERFAMILY Zn-dependent exopeptidases 75 476 - -
Cam02g1127 491 PIRSF ACY-1 67 480 - -
Cam02g1127 491 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 176 215 IPR001261 -
Cam02g1127 491 FunFam Aminoacylase-1, putative 397 478 - -
Cam02g1127 491 Pfam Peptidase family M20/M25/M40 141 473 IPR002933 GO:0016787(InterPro)
Cam02g1127 491 Gene3D - 397 477 - -
Cam02g1127 491 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 140 149 IPR001261 -
Cam02g1127 491 Gene3D Zn peptidases 68 259 - -
Cam02g1127 491 Gene3D - 260 370 - -
Cam02g1127 491 FunFam aminoacylase-1 isoform X1 260 371 - -
Cam02g1127 491 FunFam Aminoacylase 1 69 260 - -
Cam02g1127 491 CDD M20_AcylaseI_like 74 476 - -
Cam02g1127 491 PANTHER AMINOACYLASE-1 53 480 IPR052083 GO:0004046(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1127 K14677 - - csv:101213747 821.617
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1127 Cam-Chr2:21153645 Cam06g1832 Cam-Chr6:29353917 1.60E-145 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31