Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1133 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA 495 45.25 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21428507 21429219 - CaPI482276_02g011330.1 Cam02g1133 120875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1133 164 Pfam Ring finger domain 98 141 IPR001841 -
Cam02g1133 164 SMART ring_2 99 140 IPR001841 -
Cam02g1133 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Cam02g1133 164 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cam02g1133 164 SUPERFAMILY RING/U-box 88 147 - -
Cam02g1133 164 PANTHER - 1 151 IPR044249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0314 Cam-Chr2:3885461 Cam02g1133 Cam-Chr2:21428507 3.00E-53 dispersed
Cam02g1133 Cam-Chr2:21428507 Cam06g0353 Cam-Chr6:5650961 2.10E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1133 K16285 - csv:101216645 315.849