Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1162 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCCCATCAGCACCACTCCACTATGCCGGTCTCCGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCGTTGAGAGCTATGGAGCCGGTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATTAGTGGAGATGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGTGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGAAGACGGCACAGAGACTCTCTGCCTGTTGATGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCGGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATGTACCGTTCCAGAGGAAATCTAGCTTGCTGAGGGCTAAAACTAAGTCTAGATTGCTAGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTACTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGATTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAAGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACTATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAAAGATTCAACTCACGAGGACGAATCGACAACGCAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGATATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGATATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTTGACCTGCAATACCGTCTCCTACCGCTCGATATCAATGTCCGTTCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 43.07 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSHQHHSTMPVSDASDRKEFIVKVDQADASSNASLRAMEPVNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPVVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRVQQPQQRDRRAYGGNGEDDSAAEVLRCTSNSSFDRDVPFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKILASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22735526 22739429 + CaPI482276_02g011620.1 Cam02g1162 120904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1162 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cam02g1162 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Cam02g1162 930 Gene3D - 760 809 IPR023408 -
Cam02g1162 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam02g1162 930 Coils Coil 490 513 - -
Cam02g1162 930 MobiDBLite consensus disorder prediction 189 228 - -
Cam02g1162 930 MobiDBLite consensus disorder prediction 258 282 - -
Cam02g1162 930 MobiDBLite consensus disorder prediction 535 554 - -
Cam02g1162 930 MobiDBLite consensus disorder prediction 189 224 - -
Cam02g1162 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Cam02g1162 930 MobiDBLite consensus disorder prediction 260 277 - -
Cam02g1162 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1162 Cam-Chr2:22735526 Cam05g1732 Cam-Chr5:25888696 1.80E-137 dispersed
Cam03g1541 Cam-Chr3:30366165 Cam02g1162 Cam-Chr2:22735526 2.10E-147 transposed
Cam06g0949 Cam-Chr6:14322974 Cam02g1162 Cam-Chr2:22735526 3.30E-147 transposed
Cam02g0406 Cam-Chr2:4798383 Cam02g1162 Cam-Chr2:22735526 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1162 K22048 - csv:101210264 1579.69