Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1163 ATGGAGAAGACGATGATGAGTTTAAATCATCTGTTTGTTACGACATTCATCGGGTGTTTGTCCACTTTCGTGTTGATTCCGAGCATTACAGACCTAACAATGGCGGCTCTGTGTCCTCAACAGGATCACTGCTCCCTTGCCATTTATCTCTCTGGTCTTCAGCAGGTGATTGTAGGGCTTGGAGCAATGGTGATTACACCAGTAATTGGGAATTTATCCGACAAATATGGAAGGAAAACAATGCTGACTCTCCCTATGACATTTTCAATCATACCACTCACCATAATGGCATACAGAAGAACTACCAACTTCTTCTATGCATTCTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACTACAGTTTCCCTTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGAACAAAGGATTTCAGCGTTTGGAATCCTATCTGGGATCAAAGCTGTAGGTTATGTATGTGGAACCTTTTTAGCTCGACTCCTTCCAATTGCTACAGTGTTTCAGGTGGCAACTTTCATGTCTGTGCTTGCAGTAGTGTACATGAGGATTTTTCTCAAGGAAAGCATTCCGGATCGTAATGAGTTGACTCAGCCAATCTTCGATGGTGATGATGAAAATGGGCCACAATTGACTACAAGAAACCAGTTATTGACAGGGATTTCTTCTATTAGAGATGTTATCTGCTTGATCACGAGTAGCACAACATTTTCACAAATAGCAAGAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTATCGTTTTTCTTAAAGGCCCGTTTTCACTTCGACAAAAACCAGTTTGCTGATTTGATGATAATTGATGGTGTTGTTGGGGCCGCTTCACAGCTTCTTTTGATGCCCGTTTTGACACCAGCTATAAGACAGGAGAAGTTGCTTTCAATAGGGTTGTGGGCAATCTTTATGCTACTTTACAGCATTGCTTGGTCCGTTTGGGTACCTTATGCTTCAAGAGCACTTTCAATTTTTACAGTTATTGTCAGTCCAATAATATTCAACATTGCATCAAAACAAGTTGGACCAAGTGAGCAGGGGAAGGCCCAAGGATGCATCTCAGGCATCAATTCCCTTGCCAACATTGTATCTCCATTACTTTTCAGCACCTTGATAGCTCTTTTCCTCTCCAAGGATGCACCATTTAACTTCCCTGGCTTCAGTATTTTGTGCATTGGGCTCACTTCGTTGGTTGGGTTCACTCTAAGCCTGATGATCCGAGTAGATCCCGTCACTTTCATTCAGAAAAGCAACAACTTAGATCCCGTTTGA 1311 42.26 MEKTMMSLNHLFVTTFIGCLSTFVLIPSITDLTMAALCPQQDHCSLAIYLSGLQQVIVGLGAMVITPVIGNLSDKYGRKTMLTLPMTFSIIPLTIMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSLALAYVADKTSEEQRISAFGILSGIKAVGYVCGTFLARLLPIATVFQVATFMSVLAVVYMRIFLKESIPDRNELTQPIFDGDDENGPQLTTRNQLLTGISSIRDVICLITSSTTFSQIARVSFFNSLAEKGMQASLSFFLKARFHFDKNQFADLMIIDGVVGAASQLLLMPVLTPAIRQEKLLSIGLWAIFMLLYSIAWSVWVPYASRALSIFTVIVSPIIFNIASKQVGPSEQGKAQGCISGINSLANIVSPLLFSTLIALFLSKDAPFNFPGFSILCIGLTSLVGFTLSLMIRVDPVTFIQKSNNLDPV 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22799506 22803177 + CaPI482276_02g011630.1 Cam02g1163 120905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1163 436 Pfam Major Facilitator Superfamily 11 198 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cam02g1163 436 Pfam Major Facilitator Superfamily 247 407 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cam02g1163 436 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cam02g1163 436 CDD MFS_SLC46_TetA_like 11 418 - -
Cam02g1163 436 Gene3D MFS general substrate transporter like domains 6 417 IPR036259 -
Cam02g1163 436 PRINTS Tetracycline resistance protein signature 144 166 IPR001958 GO:0022857(InterPro)
Cam02g1163 436 PRINTS Tetracycline resistance protein signature 51 70 IPR001958 GO:0022857(InterPro)
Cam02g1163 436 PRINTS Tetracycline resistance protein signature 362 385 IPR001958 GO:0022857(InterPro)
Cam02g1163 436 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 424 IPR020846 GO:0022857(InterPro)
Cam02g1163 436 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 8 410 - -
Cam02g1163 436 SUPERFAMILY MFS general substrate transporter 13 418 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1163 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1163 Cam-Chr2:22799506 Cam08g1875 Cam-Chr8:24761081 3.60E-112 dispersed
Cam02g0410 Cam-Chr2:4843775 Cam02g1163 Cam-Chr2:22799506 1.60E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123