Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1166 AATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGTGTCTGAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 624 43.59 NRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLCLSSESTITSDHSEDCAVEDV 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22880511 22882576 + CaPI482276_02g011660.1 Cam02g1166 120908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1166 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 35 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cam02g1166 207 SUPERFAMILY DNA-binding domain 95 152 IPR016177 GO:0003677(InterPro)
Cam02g1166 207 SMART rav1_2 95 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 Pfam AP2 domain 95 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 CDD AP2 94 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1166 207 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Cam02g1166 207 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1166 Cam-Chr2:22880511 Cam04g0679 Cam-Chr4:21077689 6.70E-40 dispersed
Cam02g1166 Cam-Chr2:22880511 Cam11g0625 Cam-Chr11:7791580 2.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51490 PF00847 AP2 5.90E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1166 - - - 0.0