Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1175 ATGGTGTTGTCTCTAATGGAAAACAAGAAGATGAAGATTAATCTATTTATCTCCAATTTATGCTTATGCTTTTTGCTTTTATTATGGTCCGCTAGAGGGAATCTCATCAATTCATTAAGTGACAGTCATGGAGATTCTATTGTTTCGGATGAAGGAAGGTTCGAACTTGGTTTTTTCAGTCCTCATGGAAGCTCAGACTCTAGAAGATATGTCGGAATATGGTACCACGACACAAAACCGGAGGTGGTTGTATGGGTTGCCAATAGGAACCAACCACTATACAACAACAATGGAGCTTTCGCTATCAAAAATGGCAAACTCATGGTATTGGCATCAAACGGCACTGATTTATGGTCCACCAAGCTCCAATTCCCTTCTGATAACATGACAATGGAGCTGATGGCTTCTGGGAATTTAGTCATCAAGCAATCAGGTGTCAAAGGTATCATTATGTGGCAAAGCTTCCACAATCCAACCGACACATTTCTTCCAGGAATGAACATAGTTGATGACTGGAAACTGACTTCTTGGAAAGCTTCAGATGACCCATCGTCTGGGAATTTCAAGTTTCTCAAAGATACAGGAGGTCGCTACATCATTGAGAGACTAAGTGCTCAGTATTGGGTTAGCAAGGAATTCTGGCAAAATTACTCAACTGACACTAATGGAAAGATTGATGAAGTCATAGACTTATTGTCAACGATTAGTGTCGCTAGCTTGAAGGCCAACAACTTCACCGTTAATTTCCAAAATCAAGAACTGGATTACAACTATACAAGGATGGTCATGAGTTCCACCGGGAGAATTCAGTATCTTGCAAGAAACAGAGCGAATGGAAAATGGAATGTCATCTGGTCGGAACCGGAAAACATATGTGGTGCAGTGTCAACTTGTGGGACCTTTGCTAGCTGTCGAAGTGACACTAAACACACTTGCAGATGCTTGCCTGGGTTTGAACCTAAGTTGAAGGAAGAATGGGATTCTGGTGATTACTCAAATGGGTGCCAGAGAAAATCAGAAATTTGCATCAAAGAAGAGGTTGAAGCTCGAGATTTCTTGACAATAAATATGAAGGTGAGAAAGACATCCAATATTGTCAAAATCAATGGTGTTGAGGAATGTCAAATCAAGTGCCTTGAATCTTGTACATGTAAAGCATATGTAGAAATTAGTACTATTAGATCTGATACTGTGTGCGGTATTTGGGAAGATGACCTCCAAAGCATTTGGGAATATACCGATGGTGGTGCTAATGTTAACGTCCGTGTCAAACGTTTTGACATAGAATTGACACAACTCGATTGTAAAACATGTGGAAGCAACATTGTCCCTTATCCTCTAAGTTTGAGCACAGAATCCGACTGTGGTGATCCGCTATATCGTAACTTCAGTTGCAACTTTTCCACTGGTCAGATCATCTTTCATACGGCAGATGTTTACTACAATGTCACCAACATCAATCCACAACTAAAAACTTTTACCATTGCAACAAATGGGTCTATCTGCAGAGGTAATGATGCAAATGCAATTCAAAAGCTTCTGAAATTGGAACACTCGTCTACATTCAAAGTAAGCAGCAACTGTAACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCATTAGAGCCAATCTGCAGTTCACCAAGAGATTGCACCAATTGGCCTAATTCATTATGCAACTCATCAACAGACGGAACAAAGAGGTGCTTGTGTCATTCTTCTTTTAAATGGATTGGTACCGGCTGCCAAATTCTTCCAGAGGATGGTTTGAATAAGCCACATCCAAGGCAGAGAAATATCAGAATTAGTATCATTGTCGTAGTGATCATGGCTGGGTTGATTGTTATTTCTTGCTTGGTGTCGTATATTTACTACAAAAGAAGGAAGGTACAACATAAAAAAGAGCAAAGAACAAGTTTTTGGGGAAACCAGGAAACGACTCACTTATATGAAAGTGAGAAACGTATTAGAGACTTTATGGGTTCCGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCAGTTTTTGATTTGGAAACCATACTTATTGCCACAGACAACTTCTCGGAAGCAAACAAAATTGGACGAGGAGGATTTGGGACAGTGTACAAGGGACGTTTCTCGGGAGGACTGGAAATTGCAATAAAGAGGCTGTCGCAAGGTTCAGCCCAAGGCGTAAATGAGTTTAAGAATGAAGCAATTCTGATCGCCAAACTTCAGCATCGAAATCTAGTTAGACTTTTGGGCTATTGTGTTGCAGGAGAAGAGAAAATGTTGGTCTATGAATATATGCCCAACAAAAGCTTAGACTTTTTTATGTTTGATCAAACACAAAGGTTACTGTTGAATTGGGAGATGCGTTTTAATATCATCATCGGTATTGCTCGAGGGCTAGTTTATCTCCATGAAGATTCAAGGTTGAAGATTATTCATAGAGATATGAAAACAAGCAATGTTTTGTTGGACGCAGAAATGAACCCTAAAATTTCCGACTTTGGTTTAGCAAGAATCATTGATGGCAAGCAAACAGAGGCAATCACCAACAGAGTTGTTGGAACTTACGGATACATGTCACCTGAATATGCATTGGATGGATCATTCTCGGTGAAATCTGACGTGTTTAGTTACGGTATAGTCGTGTTGGAGATTATTAGTGGAAGAAGGAACACTGGGTTCTACCAATCTAAAGAGGCATTAAACCTTCTTGGATATGTATGGAATTTGTGGAGAGAGAAAAAGGCAATGGAAATAGCAGAGGTGGGCATACGAAAAAGCTGCAATCCAAATGAAGTTGTAAAATGTGTGGGTGTGGGATTGCTTTGTGTGCAAGAAGACCCCAACGATCGTCCCACAATGTCAAATGTAGCTTTTATGTTAAGCTCTGGCAATGACCTTGCTTCGCTTCCAGATCCTAAACAACCAGCTTTCGTTGATAAAAGATTAACTCCTACTTCTTCTGCAACTTCTTCTTTAGGCTTGAAGCAAGAAATTGTAAGCAATGATTATAGCTTACTTGAGCCTCGTTAA 3039 39.78 MVLSLMENKKMKINLFISNLCLCFLLLLWSARGNLINSLSDSHGDSIVSDEGRFELGFFSPHGSSDSRRYVGIWYHDTKPEVVVWVANRNQPLYNNNGAFAIKNGKLMVLASNGTDLWSTKLQFPSDNMTMELMASGNLVIKQSGVKGIIMWQSFHNPTDTFLPGMNIVDDWKLTSWKASDDPSSGNFKFLKDTGGRYIIERLSAQYWVSKEFWQNYSTDTNGKIDEVIDLLSTISVASLKANNFTVNFQNQELDYNYTRMVMSSTGRIQYLARNRANGKWNVIWSEPENICGAVSTCGTFASCRSDTKHTCRCLPGFEPKLKEEWDSGDYSNGCQRKSEICIKEEVEARDFLTINMKVRKTSNIVKINGVEECQIKCLESCTCKAYVEISTIRSDTVCGIWEDDLQSIWEYTDGGANVNVRVKRFDIELTQLDCKTCGSNIVPYPLSLSTESDCGDPLYRNFSCNFSTGQIIFHTADVYYNVTNINPQLKTFTIATNGSICRGNDANAIQKLLKLEHSSTFKVSSNCNSEFNEIDIQWEKPLEPICSSPRDCTNWPNSLCNSSTDGTKRCLCHSSFKWIGTGCQILPEDGLNKPHPRQRNIRISIIVVVIMAGLIVISCLVSYIYYKRRKVQHKKEQRTSFWGNQETTHLYESEKRIRDFMGSGMFGEDDRKAIEVPVFDLETILIATDNFSEANKIGRGGFGTVYKGRFSGGLEIAIKRLSQGSAQGVNEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDFFMFDQTQRLLLNWEMRFNIIIGIARGLVYLHEDSRLKIIHRDMKTSNVLLDAEMNPKISDFGLARIIDGKQTEAITNRVVGTYGYMSPEYALDGSFSVKSDVFSYGIVVLEIISGRRNTGFYQSKEALNLLGYVWNLWREKKAMEIAEVGIRKSCNPNEVVKCVGVGLLCVQEDPNDRPTMSNVAFMLSSGNDLASLPDPKQPAFVDKRLTPTSSATSSLGLKQEIVSNDYSLLEPR 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23257805 23261455 + CaPI482276_02g011750.1 Cam02g1175 120917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1175 1012 SMART serkin_6 692 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1175 1012 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Cam02g1175 1012 Pfam S-locus glycoprotein domain 242 321 IPR000858 GO:0048544(InterPro)
Cam02g1175 1012 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 658 767 - -
Cam02g1175 1012 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524(InterPro)
Cam02g1175 1012 Gene3D Phosphorylase Kinase; domain 1 666 767 - -
Cam02g1175 1012 ProSiteProfiles Bulb-type lectin domain profile. 32 154 IPR001480 -
Cam02g1175 1012 Gene3D - 33 156 IPR036426 -
Cam02g1175 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1175 1012 Gene3D Transferase(Phosphotransferase) domain 1 768 972 - -
Cam02g1175 1012 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 22 978 - -
Cam02g1175 1012 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 768 971 - -
Cam02g1175 1012 SUPERFAMILY Protein kinase-like (PK-like) 676 984 IPR011009 -
Cam02g1175 1012 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 183 IPR036426 -
Cam02g1175 1012 ProSiteProfiles Protein kinase domain profile. 692 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1175 1012 SMART blect_4 38 158 IPR001480 -
Cam02g1175 1012 Pfam PAN-like domain 356 408 IPR003609 -
Cam02g1175 1012 CDD STKc_IRAK 698 963 - -
Cam02g1175 1012 CDD B_lectin 37 158 IPR001480 -
Cam02g1175 1012 Pfam Protein tyrosine and serine/threonine kinase 695 960 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1175 1012 Pfam D-mannose binding lectin 83 178 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1175 Cam-Chr2:23257805 Cam03g0540 Cam-Chr3:6241906 1.10E-146 dispersed
Cam02g1175 Cam-Chr2:23257805 Cam02g0162 Cam-Chr2:2645804 2.00E-270 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84962 PF07714 PK_Tyr_Ser-Thr 9.70E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1175 - - - 0.0