Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1185 ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCCACTTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCACCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGATGA 972 43.62 MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHELAQEKSDLREEKALLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPPLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23593294 23595709 + CaPI482276_02g011850.1 Cam02g1185 120927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1185 323 Coils Coil 90 152 - -
Cam02g1185 323 MobiDBLite consensus disorder prediction 300 323 - -
Cam02g1185 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983(InterPro)
Cam02g1185 323 MobiDBLite consensus disorder prediction 215 257 - -
Cam02g1185 323 SMART finulus 56 106 IPR011598 GO:0046983(InterPro)
Cam02g1185 323 MobiDBLite consensus disorder prediction 271 323 - -
Cam02g1185 323 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Cam02g1185 323 MobiDBLite consensus disorder prediction 215 249 - -
Cam02g1185 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 114 IPR036638 GO:0046983(InterPro)
Cam02g1185 323 CDD bHLH_AtILR3_like 55 129 - -
Cam02g1185 323 PANTHER TRANSCRIPTION FACTOR BHLH121 33 320 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cam02g1185 323 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Cam02g1185 323 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2074 Cam-Chr1:33802738 Cam02g1185 Cam-Chr2:23593294 4.10E-54 dispersed
Cam02g1185 Cam-Chr2:23593294 Cam10g0535 Cam-Chr10:7883624 3.00E-10 dispersed
Cam02g1185 Cam-Chr2:23593294 Cam05g1646 Cam-Chr5:24234879 2.10E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51492 PF00010 HLH 1.20E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1185 - - - 0.0