Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1246 ATGGAAGACGGGGAGCTTGAATCCTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCAGAGTCTGTGGACAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGCGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACGGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGGAGGAGGGGTCTGTTTTCTCTTCCGCAACCCATTCACCCGCTTTCTAGGTTGTTTGGGATGGTCATTTATGTTGAATGAGAAGAACTAG 870 45.06 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKGGGVCFLFRNPFTRFLGCLGWSFMLNEKN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24660877 24663067 + CaPI482276_02g012460.1 Cam02g1246 120988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1246 289 FunFam Basic leucine zipper 24 75 153 - -
Cam02g1246 289 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1246 289 MobiDBLite consensus disorder prediction 77 97 - -
Cam02g1246 289 Gene3D - 75 153 - -
Cam02g1246 289 Coils Coil 98 132 - -
Cam02g1246 289 CDD bZIP 91 144 - -
Cam02g1246 289 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1246 289 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1246 289 MobiDBLite consensus disorder prediction 72 97 - -
Cam02g1246 289 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1246 289 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 184 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1246 K25785 - - csv:101219501 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0437 Cam-Chr2:5088904 Cam02g1246 Cam-Chr2:24660877 2.10E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0124 . 1 344 bZIP Transcription Factor Family AT2G35530 67.6 8.2e-106 380.9
Cam09g1142 . 1 344 bZIP Transcription Factor Family AT2G35530 61.9 2.9e-103 372.5
Cam07g0518 . 4 343 bZIP Transcription Factor Family AT2G40620 56.8 2.9e-86 315.8
Cam02g1969 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.5e-69 259.6
Cam02g0480 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.5e-38 155.2
Cam02g0482 . 382 518 bZIP Transcription Factor Family AT2G40620 67.2 1.1e-37 154.5
Cam02g1246 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.6e-65 245.7
Cam02g0437 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 3.0e-53 205.7
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cam05g2888 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.8e-132 469.2
Cam10g1600 . 176 556 bZIP Transcription Factor Family AT5G06950 64.0 9.2e-116 413.7
Cam08g0948 . 195 520 bZIP Transcription Factor Family AT5G06950 69.6 7.8e-115 410.6
Cam10g1699 . 219 512 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cam01g1273 . 169 452 bZIP Transcription Factor Family AT5G06950 58.6 5.2e-87 318.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 2.7e-83 305.8
Cam07g0963 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 7.9e-75 277.7
Cam11g0805 . 138 430 bZIP Transcription Factor Family AT5G06950 51.5 1.5e-70 263.5
Cam01g1273 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 4.2e-130 461.5
Cam02g2288 . 199 510 bZIP Transcription Factor Family AT1G08320 68.6 1.1e-117 420.2
Cam08g1522 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.2e-98 355.1
Cam10g1699 . 196 512 bZIP Transcription Factor Family AT1G08320 58.4 1.3e-94 343.6
Cam05g2888 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.8e-94 341.7
Cam08g0948 . 236 522 bZIP Transcription Factor Family AT1G08320 58.5 2.5e-87 319.3
Cam10g1600 . 217 556 bZIP Transcription Factor Family AT1G08320 51.8 1.1e-85 313.9
Cam02g1246 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 1.7e-66 249.6
Cam02g0437 . 2 245 bZIP Transcription Factor Family AT2G16770 57.1 9.5e-57 217.2
Cam08g1522 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cam05g2888 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cam10g1600 . 197 556 bZIP Transcription Factor Family AT5G06960 61.2 2.2e-103 372.5
Cam08g0948 . 221 520 bZIP Transcription Factor Family AT5G06960 67.7 1.1e-102 370.2
Cam10g1699 . 205 512 bZIP Transcription Factor Family AT5G06960 60.1 1.8e-89 326.2
Cam01g1273 . 164 452 bZIP Transcription Factor Family AT5G06960 56.7 1.9e-83 306.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 1.4e-81 300.1
Cam07g0963 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 6.9e-73 271.2
Cam02g0480 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 1.4e-132 470.3
Cam02g0482 . 1 513 bZIP Transcription Factor Family AT4G38900 59.6 1.8e-132 469.9
Cam08g1132 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.2e-38 158.3
Cam09g0955 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.3e-37 154.8
Cam07g0518 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.2e-37 152.1
Cam05g0849 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cam02g0482 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 2.6e-101 366.3
Cam02g0480 . 64 535 bZIP Transcription Factor Family AT2G21230 53.9 4.2e-99 359.0
Cam09g0955 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.1e-38 156.4
Cam02g0235 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.7e-57 219.2
Cam08g2074 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.2e-86 315.8
Cam01g1979 . 594 943 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cam05g2888 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 5.9e-131 464.2
Cam10g1600 . 176 556 bZIP Transcription Factor Family AT3G12250 64.5 1.2e-115 413.3
Cam08g0948 . 195 520 bZIP Transcription Factor Family AT3G12250 68.7 8.6e-114 407.1
Cam10g1699 . 219 512 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cam01g1273 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 6.4e-85 311.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 7.1e-84 307.8
Cam07g0963 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 4.6e-75 278.5
Cam08g0948 . 75 520 bZIP Transcription Factor Family AT1G68640 62.0 9.5e-140 493.8
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.1e-115 412.9
Cam05g2888 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.7e-110 396.0
Cam10g1600 . 174 556 bZIP Transcription Factor Family AT1G68640 57.8 3.4e-105 379.0
Cam10g1699 . 207 512 bZIP Transcription Factor Family AT1G68640 55.8 2.5e-87 319.7
Cam01g1273 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 8.8e-85 311.2
Cam02g2288 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 1.7e-80 297.0
Cam09g0955 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 3.2e-63 239.2
Cam08g1132 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 5.5e-63 238.4
Cam05g0130 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.1e-81 298.1
Cam05g0849 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.0e-113 407.1
Cam05g0852 . 43 298 bZIP Transcription Factor Family AT2G31370 67.9 1.5e-83 307.0
Cam07g0518 . 25 251 bZIP Transcription Factor Family AT2G31370 50.6 7.6e-48 188.3
Cam08g1304 . 17 309 bZIP Transcription Factor Family AT3G56850 55.1 5.1e-65 245.0
Cam10g0124 . 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.0e-97 354.0
Cam09g1142 . 1 344 bZIP Transcription Factor Family AT1G32150 62.0 2.8e-95 345.9
Cam05g0849 . 10 365 bZIP Transcription Factor Family AT1G06070 70.0 2.8e-125 445.7
Cam05g0852 . 1 298 bZIP Transcription Factor Family AT1G06070 68.0 9.4e-97 350.9
Cam09g0955 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 5.6e-41 165.6
Cam02g0482 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.8e-38 155.6
Cam02g0480 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.8e-38 154.8
Cam08g2074 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.2e-86 315.8
Cam10g0124 . 1 344 bZIP Transcription Factor Family AT2G35530 67.6 8.2e-106 380.9
Cam09g1142 . 1 344 bZIP Transcription Factor Family AT2G35530 61.9 2.9e-103 372.5
Cam07g0518 . 4 343 bZIP Transcription Factor Family AT2G40620 56.8 2.9e-86 315.8
Cam02g1969 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.5e-69 259.6
Cam02g0480 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.5e-38 155.2
Cam02g0482 . 382 518 bZIP Transcription Factor Family AT2G40620 67.2 1.1e-37 154.5
Cam02g1246 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.6e-65 245.7
Cam02g0437 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 3.0e-53 205.7
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cam05g2888 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.8e-132 469.2
Cam10g1600 . 176 556 bZIP Transcription Factor Family AT5G06950 64.0 9.2e-116 413.7
Cam08g0948 . 195 520 bZIP Transcription Factor Family AT5G06950 69.6 7.8e-115 410.6
Cam10g1699 . 219 512 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cam01g1273 . 169 452 bZIP Transcription Factor Family AT5G06950 58.6 5.2e-87 318.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 2.7e-83 305.8
Cam07g0963 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 7.9e-75 277.7
Cam11g0805 . 138 430 bZIP Transcription Factor Family AT5G06950 51.5 1.5e-70 263.5
Cam01g1273 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 4.2e-130 461.5
Cam02g2288 . 199 510 bZIP Transcription Factor Family AT1G08320 68.6 1.1e-117 420.2
Cam08g1522 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.2e-98 355.1
Cam10g1699 . 196 512 bZIP Transcription Factor Family AT1G08320 58.4 1.3e-94 343.6
Cam05g2888 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.8e-94 341.7
Cam08g0948 . 236 522 bZIP Transcription Factor Family AT1G08320 58.5 2.5e-87 319.3
Cam10g1600 . 217 556 bZIP Transcription Factor Family AT1G08320 51.8 1.1e-85 313.9
Cam02g1246 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 1.7e-66 249.6
Cam02g0437 . 2 245 bZIP Transcription Factor Family AT2G16770 57.1 9.5e-57 217.2
Cam08g1522 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cam05g2888 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cam10g1600 . 197 556 bZIP Transcription Factor Family AT5G06960 61.2 2.2e-103 372.5
Cam08g0948 . 221 520 bZIP Transcription Factor Family AT5G06960 67.7 1.1e-102 370.2
Cam10g1699 . 205 512 bZIP Transcription Factor Family AT5G06960 60.1 1.8e-89 326.2
Cam01g1273 . 164 452 bZIP Transcription Factor Family AT5G06960 56.7 1.9e-83 306.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 1.4e-81 300.1
Cam07g0963 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 6.9e-73 271.2
Cam02g0480 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 1.4e-132 470.3
Cam02g0482 . 1 513 bZIP Transcription Factor Family AT4G38900 59.6 1.8e-132 469.9
Cam08g1132 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.2e-38 158.3
Cam09g0955 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.3e-37 154.8
Cam07g0518 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.2e-37 152.1
Cam05g0849 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cam02g0482 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 2.6e-101 366.3
Cam02g0480 . 64 535 bZIP Transcription Factor Family AT2G21230 53.9 4.2e-99 359.0
Cam09g0955 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.1e-38 156.4
Cam02g0235 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.7e-57 219.2
Cam01g1979 . 594 943 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cam05g2888 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 5.9e-131 464.2
Cam10g1600 . 176 556 bZIP Transcription Factor Family AT3G12250 64.5 1.2e-115 413.3
Cam08g0948 . 195 520 bZIP Transcription Factor Family AT3G12250 68.7 8.6e-114 407.1
Cam10g1699 . 219 512 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cam01g1273 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 6.4e-85 311.2
Cam02g2288 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 7.1e-84 307.8
Cam07g0963 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 4.6e-75 278.5
Cam08g0948 . 75 520 bZIP Transcription Factor Family AT1G68640 62.0 9.5e-140 493.8
Cam08g1522 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.1e-115 412.9
Cam05g2888 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.7e-110 396.0
Cam10g1600 . 174 556 bZIP Transcription Factor Family AT1G68640 57.8 3.4e-105 379.0
Cam10g1699 . 207 512 bZIP Transcription Factor Family AT1G68640 55.8 2.5e-87 319.7
Cam01g1273 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 8.8e-85 311.2
Cam02g2288 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 1.7e-80 297.0
Cam09g0955 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 3.2e-63 239.2
Cam08g1132 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 5.5e-63 238.4
Cam05g0130 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.1e-81 298.1
Cam05g0849 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.0e-113 407.1
Cam05g0852 . 43 298 bZIP Transcription Factor Family AT2G31370 67.9 1.5e-83 307.0
Cam07g0518 . 25 251 bZIP Transcription Factor Family AT2G31370 50.6 7.6e-48 188.3
Cam08g1304 . 17 309 bZIP Transcription Factor Family AT3G56850 55.1 5.1e-65 245.0
Cam10g0124 . 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.0e-97 354.0
Cam09g1142 . 1 344 bZIP Transcription Factor Family AT1G32150 62.0 2.8e-95 345.9
Cam05g0849 . 10 365 bZIP Transcription Factor Family AT1G06070 70.0 2.8e-125 445.7
Cam05g0852 . 1 298 bZIP Transcription Factor Family AT1G06070 68.0 9.4e-97 350.9
Cam09g0955 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 5.6e-41 165.6
Cam02g0482 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.8e-38 155.6
Cam02g0480 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.8e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001037 1 3 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 11 9 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51494 PF07716 bZIP_2 5.40E-15 CL0018 Cam TF