Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1263 ATGGCGGCGAGTGCATCTTGGCATCCCCAGGAAAATGGGTTCAACGAGATCTGCGGCTTGCTGGAGCAGCAAATTTCTCCTTCTTCAAATCCTGATAAGTCCCAGATTTGGCAGCAACTTCAGCAATACTCTCAGTTCCCCGACTTCAATAATTACCTCGCTTTTATTCTTGCACGAGCCGAGGTTCTTCGAGTTCTCTCTACTTTTGCGGTTTTGTTTGAATGTTCTTGCAATTTCGCTTATTGGGTTTTGATGGGGTTGGTTGGAGTGGACTGTTGCATCTCGAGACTTCTGGGAATGGAGTTGATATATTGGAGCTTTCTGCAGGGTAAATCAGTTGAGGTTCGACAAGCTGCTGGCTTGCTTTTGAAAAACAACCTTAGAACTGCATACAAGTCGATGACTCCTGCCTTTCAGCAATATATTAAATCCGAATTATTGCCATGTATGGGAGCTGCAGACAGACATATTAGGTCTACAGTCGGGACCATCATCAGTGTCGTTGTTCAGCTAGGGGGAATATTGGGGTGGCCTGAGTTGTTGCAAGCACTTGTAAGATGCTTAGACAGCAAAGACCAGAATCACATGGAAGGTGCTATGGATGCTTTGTCCAAGATTTGTGAAGATATACCTCAAGTGCTTGACTCAGATGTACCTGGATTGCCTGAACGCCCAATCAACATATTTCTTCCTAGATTATTTCAGTTTTTTCAGTCACCACATGCTACATTGCGAAAACTTTCCTTGAGTTCTGTGAATCAATACATCATGCTGATGCCCACTGCGCTATATATATCCATGGACCAGTATCTTCAAGGTTTATTTGTTCTTGCTAATGACCCTACGTCAGAAGTGCGAAAGCTGGTTTGTCAAGCATTTGTGCAGCTAATTGAAGTACGCCCAACTTTCTTGGAGCCGCACCTGCGGAATGTAATTGAATACATGTTGCAAGTCAATAAGGATGCTGACGAGGAAGTTTCGCTTGAAGCTTGTGAATTTTGGTCTGCATATTGTGATGCCCAATTACCTCCTGAGAACTTAAGAGAGTTCTTGCCACGTTTAATTCCAGCATTATTATCAAATATGGTTTATGCTGATGACGATGAATCACTTCTTGAGGCTGAGGAAGATGGATCTCTTCCAGACCGAGAGCAGGATCTAAAACCTCGTTTCCATTCATCAAGGTTACATGGGTCAGATAATGCAGAAGATGATGATGATGACATTGTAAATATATGGAACTTGCGCAAATGCAGTGCTGCAGCTCTTGATATTCTCTCAAATGTGTTTGGGGATGAAATTCTTCCTATGTTGATGCCCATTGTTCAGGTCAATTTGTCCACTAATGGTGATGAAGCCTGGAAAGAGAGGGAAGCTGCTGTATTGGCTCTTGGTGCCATAGCTGAAGGTTGCATTAGTGGACTTTATCCTCATCTGCCTGAGATTGTTACATTTCTCATTCCTCTTTTAGATGATAAATTTCCTCTAATAAGGAGTATATCATGTTGGACACTTTCTCGTTTCAGCAAGTTCATTGTGCAGGGCATTGGAAATCAGAAAGGTTACGAACAATTTGATAAGGTTCTCATGGGACTTCTACGAAGATTATTGGACAATAACAAGAGGGTGCAAGAAGCTGCTTGTTCTGCTTTCGCAACGCTGGAGGAGGAAGCTGCTGAGGAGTTGGCGCCACATTTGAAAAATATATTACAACACCTAATATGTGCTTTTGGAAAATATCAGAGACGAAATCTACGGATAGTGTATGACGCTATTGGAACCTTAGCAGATGCTGTTGGAGGGGAGCTAAATCAGCCTGTTTATCTTGATATTCTCATGCCACCATTAATTGCCAAATGGCAGCAACTTTCGAACTCAGACAAAGATCTTTTCCCACTGTTGGAGTGCTTCACATCTATAGCACAGGCTTTGGGGACTGGATTTGCCCAATTTGCTCAGCCTGTGTATCAGAGATGCATAAGCATCATCCAGACCCAACAAATGGCTAAGGTCGATCCTGTTTCTGCTGGGGTTCAGTATGATAAAGAGTTCGTTGTGTGCTGTCTTGATCTTCTTTCAGGACTCGCAGAAGGTCTTGGCAGTGGAATTGAAAGTTTGGTTTCTCAAAGCAATCTGAGGGACTTGCTCTTGCAATGTTGCATGGATGAAGCTTCTGATGTCCGACAGAGTGCATTTGCATTGCTTGGGGATCTTGGAAGAGTATGCCACGTCCATTTGCAACCGCGTTTATCAGAATTTCTTACCGCTGCAGCAAAGCAACTGGATACTCCTAAGCTGAAGGAAATTGTTTCTGTGGCAAACAATGCCTGCTGGGCAATTGGAGAATTAGCTGTTAAGGTACACCAAGAAATTTCTCCTGTCGTTCTGACAGTGATTTCAAGCTTGGTCCCGATTCTCCAACATGCACAGGAGCTAAATAAATCTCTGGTAGAAAACAGTGCAATTACACTTGGAAGGATTGCATGGGTTTGCCCTCAGCTAGTGTCACCACATATGGAACATTTCATGCAACCATGGTGCACTGCTTTATCCATGATACGTGATGATGTAGAAAAGGAGGATGCTTTCCGAGGTCTTTGTGCTCTGGCTAAATCAAATCCATCAGGGGCACTAAATTCACTTGCTTATATGTGCAAAGCTATTGCCAGTTGGCATGAAATAAGGAGTCAAGATCTTCATAATGATGTATGCCAGGTTCTTCATGGTTATAAGCAGATGCTGAGAAATGGTGGGTGGGACCAGTGTATTTCTTCTCTAGAACCATCTGTGAAGGAAAAACTATCAAAATATCAAGTGGGATTGGTTGAGACAGCACTTGAAATGAAGCCAGCTGAAGTGGGACAATGTTGTACAGGGGGATTATGTTTGAGATAG 2895 43.04 MAASASWHPQENGFNEICGLLEQQISPSSNPDKSQIWQQLQQYSQFPDFNNYLAFILARAEVLRVLSTFAVLFECSCNFAYWVLMGLVGVDCCISRLLGMELIYWSFLQGKSVEVRQAAGLLLKNNLRTAYKSMTPAFQQYIKSELLPCMGAADRHIRSTVGTIISVVVQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLPERPINIFLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDPTSEVRKLVCQAFVQLIEVRPTFLEPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLREFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSDNAEDDDDDIVNIWNLRKCSAAALDILSNVFGDEILPMLMPIVQVNLSTNGDEAWKEREAAVLALGAIAEGCISGLYPHLPEIVTFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGNQKGYEQFDKVLMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIVYDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGFAQFAQPVYQRCISIIQTQQMAKVDPVSAGVQYDKEFVVCCLDLLSGLAEGLGSGIESLVSQSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQPRLSEFLTAAAKQLDTPKLKEIVSVANNACWAIGELAVKVHQEISPVVLTVISSLVPILQHAQELNKSLVENSAITLGRIAWVCPQLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCALAKSNPSGALNSLAYMCKAIASWHEIRSQDLHNDVCQVLHGYKQMLRNGGWDQCISSLEPSVKEKLSKYQVGLVETALEMKPAEVGQCCTGGLCLR 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24891297 24907221 + CaPI482276_02g012630.1 Cam02g1263 121005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1263 964 MobiDBLite consensus disorder prediction 374 402 - -
Cam02g1263 964 Gene3D - 3 71 IPR011989 -
Cam02g1263 964 Gene3D - 97 939 IPR011989 -
Cam02g1263 964 FunFam Transportin-1 101 939 - -
Cam02g1263 964 PANTHER IMPORTIN BETA 13 898 IPR040122 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006606(PANTHER)|GO:0006606(InterPro)|GO:0008139(PANTHER)|GO:0061608(PANTHER)
Cam02g1263 964 Pfam Importin-beta N-terminal domain 110 151 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
Cam02g1263 964 Pfam HEAT-like repeat 454 508 - -
Cam02g1263 964 SUPERFAMILY ARM repeat 7 931 IPR016024 -
Cam02g1263 964 MobiDBLite consensus disorder prediction 376 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1263 K18752 - - csv:101222100 1663.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g205 . Blo15g00387 Bda06g00473 Bda08g00980 Bpe07g00709 . . . . . Cma02g00273 Cma20g00736 . Car20g00638 . . . . . . . . . . . . . . . . . . . Cone3ag0971 Cone10ag1175 Lsi10g00510 . Chy11g00239 . . . . . . Bpe05g00300 . . . Cmo02g00270 Cmo20g00733 . . . . Cpe16g00330 Cpe05g01359 Bhi10g01809 . . . . . . Cla02g01185 Cam02g1263 Cec02g1274 Cco02g1311 Clacu02g1246 Cmu02g1212 Cre02g1527 . Csa02g01409 . Cme11g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005972 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 0 1 1 1 2 1 2 39