Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1276 ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCGTCTCTCCGACATCACTTCGTCAATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA 465 54.84 MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVNSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25023077 25023541 + CaPI482276_02g012760.1 Cam02g1276 121018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1276 154 MobiDBLite consensus disorder prediction 108 154 - -
Cam02g1276 154 CDD AP2 11 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 145 - -
Cam02g1276 154 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 SMART rav1_2 12 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Cam02g1276 154 MobiDBLite consensus disorder prediction 108 131 - -
Cam02g1276 154 Pfam AP2 domain 12 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1276 154 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1276 Cam-Chr2:25023077 Cam05g2214 Cam-Chr5:30439100 3.80E-40 dispersed
Cam01g1740 Cam-Chr1:31011813 Cam02g1276 Cam-Chr2:25023077 8.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51495 PF00847 AP2 2.90E-11 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1276 K09286 - csv:101209150 247.284