Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1278 | ATGCTTACGCTTCATATTCTTGACGGATTTGGCACAAGAAATCAAACACAAGGAAACGGGGAAAAGGAAAATCAAGCCTCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCCTTGCCTTTTCTACCATATTCACCAACACCCACCAAGATCTTTGCTCTGTTTTGTTCCCTTCTCTTCTTGGCGATCGAGCATTGAGAAAGAAGAGGGGAGGGAAAATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGTGGTTCTTTCATCAATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCCGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCTAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAACGATCGTTCGATCTCCACCGTCCGTCGAAATGACGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTACAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA | 1680 | 46.67 | MLTLHILDGFGTRNQTQGNGEKENQASALLLLLLLLPLLAFSTIFTNTHQDLCSVLFPSLLGDRALRKKRGGKMWDLNDSPDHGGTDEFVVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSETIVRSPPSVEMTKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQITTSQNWLQKNNGCFLQRPS | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25056500 | 25060129 | + | CaPI482276_02g012780.1 | Cam02g1278 | 121020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1278 | 559 | CDD | AP2 | 306 | 366 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | SUPERFAMILY | DNA-binding domain | 214 | 272 | IPR016177 | GO:0003677(InterPro) | |
Cam02g1278 | 559 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 114 | 421 | - | - | |
Cam02g1278 | 559 | ProSiteProfiles | AP2/ERF domain profile. | 307 | 364 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | FunFam | AP2-like ethylene-responsive transcription factor | 214 | 273 | - | - | |
Cam02g1278 | 559 | SUPERFAMILY | DNA-binding domain | 306 | 366 | IPR016177 | GO:0003677(InterPro) | |
Cam02g1278 | 559 | PRINTS | Ethylene responsive element binding protein signature | 308 | 319 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | PRINTS | Ethylene responsive element binding protein signature | 346 | 366 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | SMART | rav1_2 | 215 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | SMART | rav1_2 | 307 | 370 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | ProSiteProfiles | AP2/ERF domain profile. | 215 | 271 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | Pfam | AP2 domain | 306 | 356 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | Pfam | AP2 domain | 215 | 263 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | Gene3D | AP2/ERF domain | 306 | 365 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | Gene3D | AP2/ERF domain | 214 | 273 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | CDD | AP2 | 215 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam02g1278 | 559 | FunFam | AP2-like ethylene-responsive transcription factor | 306 | 366 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1278 | Cam-Chr2:25056500 | Cam02g2147 | Cam-Chr2:34252111 | 4.50E-91 | dispersed | |
Cam01g1739 | Cam-Chr1:30987597 | Cam02g1278 | Cam-Chr2:25056500 | 1.20E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51496 | PF00847 | AP2 | 2.40E-09 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1278 | K09284 | - | csv:101208665 | 782.711 |