Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1287 ATGGAGTGGGTTCGAGGGGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACTAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTACTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAGGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAGTATGAGCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCTGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGATTGATGATGAGGATTGGAGTCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCATCCATTCGTAGCCGGTGCCGGTGATGCTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTGTGCTCTTCTAATTCATCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGATTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA 1035 50.53 MEWVRGDQLGRGNFAKINLAKLTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGICPQIVTCFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGAGDAVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSLCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25248687 25249721 + CaPI482276_02g012870.1 Cam02g1287 121029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1287 344 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
Cam02g1287 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Cam02g1287 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1287 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam02g1287 344 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1287 344 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1287 344 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cam02g1287 344 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1287 344 CDD STKc_MAPKKK 2 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1287 Cam-Chr2:25248687 Cam09g0347 Cam-Chr9:3824174 4.20E-55 dispersed
Cam04g0899 Cam-Chr4:23109557 Cam02g1287 Cam-Chr2:25248687 5.70E-08 transposed
Cam01g1733 Cam-Chr1:30926986 Cam02g1287 Cam-Chr2:25248687 9.90E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84964 PF00069 Pkinase 8.30E-51 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1287 - - - 0.0