Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1298 ATGCATTCCTTCTCTTTCATCTTGATTGAGTATGATATTGACGCAGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTCGACATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATTAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAGACCAATTCTGGATGCCGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGACATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAAATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTGCTCTTGTAACCCGAATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCCGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAATCGATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGGTAAACCATCTACGTCACCATCTGGAACCAATGTTCTAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCTGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAACTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGACTTGCATAATTGATCCTTATTAG 2595 43.62 MHSFSFILIEYDIDAGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLRPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALTSKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQSMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVGKPSTSPSGTNVLNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRGTCIIDPY 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25368043 25374244 - CaPI482276_02g012980.1 Cam02g1298 121040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1298 864 CDD RING-Ubox_PUB 254 306 IPR045210 -
Cam02g1298 864 MobiDBLite consensus disorder prediction 431 542 - -
Cam02g1298 864 SMART arm_5 603 643 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SMART arm_5 808 848 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SMART arm_5 644 684 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SMART arm_5 766 806 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SMART arm_5 685 725 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SMART arm_5 726 765 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 SUPERFAMILY ARM repeat 573 846 IPR016024 -
Cam02g1298 864 SMART Ubox_2 256 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g1298 864 MobiDBLite consensus disorder prediction 438 458 - -
Cam02g1298 864 PANTHER U BOX DOMAIN-CONTAINING 46 850 - -
Cam02g1298 864 Gene3D - 556 854 IPR011989 -
Cam02g1298 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 Pfam Armadillo/beta-catenin-like repeat 644 683 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 Pfam Armadillo/beta-catenin-like repeat 687 724 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 738 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 MobiDBLite consensus disorder prediction 345 410 - -
Cam02g1298 864 FunFam RING-type E3 ubiquitin transferase 557 852 - -
Cam02g1298 864 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g1298 864 MobiDBLite consensus disorder prediction 362 403 - -
Cam02g1298 864 MobiDBLite consensus disorder prediction 521 535 - -
Cam02g1298 864 SUPERFAMILY RING/U-box 242 329 - -
Cam02g1298 864 Pfam U-box domain 253 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g1298 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 327 IPR013083 -
Cam02g1298 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 737 778 IPR000225 GO:0005515(InterPro)
Cam02g1298 864 MobiDBLite consensus disorder prediction 465 503 - -
Cam02g1298 864 Coils Coil 196 226 - -
Cam02g1298 864 FunFam RING-type E3 ubiquitin transferase 252 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1770 Cam-Chr1:31284756 Cam02g1298 Cam-Chr2:25368043 4.00E-33 dispersed
Cam02g1298 Cam-Chr2:25368043 Cam04g0651 Cam-Chr4:20588538 2.50E-24 dispersed
Cam09g0764 Cam-Chr9:7777299 Cam02g1298 Cam-Chr2:25368043 4.50E-73 transposed
Cam01g1769 Cam-Chr1:31277441 Cam02g1298 Cam-Chr2:25368043 4.00E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1298 - - - 0.0