Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1346 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGCGGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAACCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACCGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGTGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGAGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCTCTCCTCCTCCGCCGCCTCTCCACCCAAAATACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTCGGAGGCTGTTAG 1971 50.23 MSQQDYQQAAAAAAAAGFFTPFCNGYDRSSTTHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPPPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPLSSSAASPPKIPDHPSPFSAAATHCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26108584 26114418 - CaPI482276_02g013460.1 Cam02g1346 121088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1346 656 MobiDBLite consensus disorder prediction 263 313 - -
Cam02g1346 656 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam02g1346 656 MobiDBLite consensus disorder prediction 132 148 - -
Cam02g1346 656 MobiDBLite consensus disorder prediction 129 153 - -
Cam02g1346 656 MobiDBLite consensus disorder prediction 540 564 - -
Cam02g1346 656 Pfam Associated with HOX 239 379 IPR006563 -
Cam02g1346 656 CDD homeodomain 435 496 IPR001356 GO:0003677(InterPro)
Cam02g1346 656 MobiDBLite consensus disorder prediction 272 305 - -
Cam02g1346 656 SMART prehox3 233 380 IPR006563 -
Cam02g1346 656 MobiDBLite consensus disorder prediction 504 518 - -
Cam02g1346 656 SUPERFAMILY Homeodomain-like 436 502 IPR009057 -
Cam02g1346 656 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677(InterPro)
Cam02g1346 656 SMART HOX_1 435 499 IPR001356 GO:0003677(InterPro)
Cam02g1346 656 FunFam BEL1-like homeodomain protein 4 438 500 - -
Cam02g1346 656 MobiDBLite consensus disorder prediction 56 77 - -
Cam02g1346 656 MobiDBLite consensus disorder prediction 519 539 - -
Cam02g1346 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 178 525 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam02g1346 656 MobiDBLite consensus disorder prediction 503 567 - -
Cam02g1346 656 Gene3D - 438 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0245 Cam-Chr1:2746669 Cam02g1346 Cam-Chr2:26108584 7.80E-78 dispersed
Cam01g1666 Cam-Chr1:30258509 Cam02g1346 Cam-Chr2:26108584 5.80E-128 dispersed
Cam02g1346 Cam-Chr2:26108584 Cam11g0432 Cam-Chr11:5734054 3.20E-72 dispersed
Cam02g1346 Cam-Chr2:26108584 Cam02g2320 Cam-Chr2:35734900 2.00E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51503 PF07526 POX 7.10E-52 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1346 - - - 0.0