Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1388 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCCCCTATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCCGCGGCTGTAGCTGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCCCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 951 45.74 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26559836 26560786 + CaPI482276_02g013880.1 Cam02g1388 121130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1388 316 Coils Coil 86 106 - -
Cam02g1388 316 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cam02g1388 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 200 - -
Cam02g1388 316 MobiDBLite consensus disorder prediction 251 270 - -
Cam02g1388 316 MobiDBLite consensus disorder prediction 281 316 - -
Cam02g1388 316 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1388 Cam-Chr2:26559836 Cam11g1136 Cam-Chr11:22193914 2.80E-45 dispersed
Cam02g1388 Cam-Chr2:26559836 Cam10g1288 Cam-Chr10:26329080 3.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51513 PF03195 LOB 2.50E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1388 - - - 0.0