Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1437 ATGATGTTGGATCTCAACGATTCGATTATGAACCGTGACGAAACGACGGCGGAGCGGATCGTAATGGAAGATTCAGAGACTTCAAATTCCTCCGTTGTTAATGCTGCCGACGAGGTTTCCAATAGCAGAGATGAAGATTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAGTTCCGGCGGCGGCAGCGGCGGCGGCGCGTCCCCGGGATTGGTGACTCAGACACTTTTTCCGGTGGTTGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGTGGACAGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGCTCCCGGAGCTCGCAGTACCGAGGAGTTACCTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCAGCAATAAAGTTTAGAGGAGTCGATGCAGACATAAACTTCAACATAAGTGATTACGATGAAGATATGAAACACATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAACTAAGAGGACTTTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGCCAAATTATTGGGAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGAAACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTCCTCAAAAACTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGGGAGAGAAAAGAGAAACGACTCAACGAAGAGCCCTATAAATTGGGGATGGCAAATGCCAACATCGACGTCGATGTCGATATCAATGCCAATGCAAATTCAAGGAAATATGAGTGGAAAAAGCAATTACAAGAATAATAACAACAATAACAATAATAATAATATGAGTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1323 44.67 MMLDLNDSIMNRDETTAERIVMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKRESSGGGSGGGASPGLVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGQPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFSNSPQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFLADNEERGREKRNDSTKSPINWGWQMPTSTSMSISMPMQIQGNMSGKSNYKNNNNNNNNNNMSSNGIIAREEAHVSKIAASSGFSSSSNFGSLYAQNNTALHSTHCPNIS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27212324 27215991 + CaPI482276_02g014370.1 Cam02g1437 121179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1437 440 MobiDBLite consensus disorder prediction 370 394 - -
Cam02g1437 440 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677(InterPro)
Cam02g1437 440 CDD AP2 137 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1437 440 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1437 440 MobiDBLite consensus disorder prediction 22 38 - -
Cam02g1437 440 MobiDBLite consensus disorder prediction 92 112 - -
Cam02g1437 440 MobiDBLite consensus disorder prediction 22 41 - -
Cam02g1437 440 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 260 - -
Cam02g1437 440 MobiDBLite consensus disorder prediction 335 354 - -
Cam02g1437 440 MobiDBLite consensus disorder prediction 93 107 - -
Cam02g1437 440 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1437 440 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1437 440 MobiDBLite consensus disorder prediction 119 138 - -
Cam02g1437 440 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1437 440 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1437 Cam-Chr2:27212324 Cam02g2147 Cam-Chr2:34252111 3.50E-70 dispersed
Cam10g2027 Cam-Chr10:34123261 Cam02g1437 Cam-Chr2:27212324 1.40E-68 wgd
Cam02g1437 Cam-Chr2:27212324 Cam04g0845 Cam-Chr4:22670180 8.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51515 PF00847 AP2 6.10E-10 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1437 K09284 - csv:101204131 711.064