Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1439 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTTGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCGTCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTCAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAAAAAGCTGTTGCAGAAGCATTCCCGATTGGTTACTTCGATCTCCCTCATATGGCGGAGCCTCCTACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTAACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1623 45.35 MTSLRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIGYFDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27227124 27240752 + CaPI482276_02g014390.1 Cam02g1439 121181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1439 540 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cam02g1439 540 Gene3D - 30 102 IPR043131 -
Cam02g1439 540 SUPERFAMILY Histone-fold 397 498 IPR009072 GO:0046982(InterPro)
Cam02g1439 540 Gene3D Histone, subunit A 390 518 IPR009072 GO:0046982(InterPro)
Cam02g1439 540 ProSitePatterns NF-YB/HAP3 subunit signature. 431 447 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1439 540 MobiDBLite consensus disorder prediction 487 513 - -
Cam02g1439 540 MobiDBLite consensus disorder prediction 380 394 - -
Cam02g1439 540 FunFam Nuclear factor Y, subunit B1 390 489 - -
Cam02g1439 540 PRINTS CCAAT-binding transcription factor subunit A signature 428 446 - -
Cam02g1439 540 PRINTS CCAAT-binding transcription factor subunit A signature 447 465 - -
Cam02g1439 540 PRINTS CCAAT-binding transcription factor subunit A signature 466 484 - -
Cam02g1439 540 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 361 - -
Cam02g1439 540 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
Cam02g1439 540 MobiDBLite consensus disorder prediction 370 396 - -
Cam02g1439 540 Gene3D - 171 360 IPR043132 -
Cam02g1439 540 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 400 464 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0911 Cam-Chr2:12679944 Cam02g1439 Cam-Chr2:27227124 3.20E-42 transposed
Cam03g1715 Cam-Chr3:32282624 Cam02g1439 Cam-Chr2:27227124 8.70E-25 transposed
Cam07g0956 Cam-Chr7:23435449 Cam02g1439 Cam-Chr2:27227124 4.30E-40 transposed
Cam09g0608 Cam-Chr9:5996688 Cam02g1439 Cam-Chr2:27227124 5.00E-35 transposed
Cam10g0401 Cam-Chr10:6374111 Cam02g1439 Cam-Chr2:27227124 3.60E-42 transposed
Cam10g0419 Cam-Chr10:6543109 Cam02g1439 Cam-Chr2:27227124 2.60E-31 transposed
Cam10g2025 Cam-Chr10:34092939 Cam02g1439 Cam-Chr2:27227124 1.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51516 PF01063 Aminotran_4 7.80E-15 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1439 - - - 0.0