Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1550 ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGTATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAGCTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGTTTTGTGCTCATGGACGGGGCGGGGGTCGGGGCCGGGGCCGGAGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA 984 44.61 MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGVGAGAGAGECIKGSNFYDNGETGGHVI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28469564 28472720 + CaPI482276_02g015500.1 Cam02g1550 121292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1550 327 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam02g1550 327 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam02g1550 327 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cam02g1550 327 MobiDBLite consensus disorder prediction 166 196 - -
Cam02g1550 327 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cam02g1550 327 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam02g1550 327 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam02g1550 327 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cam02g1550 327 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Cam02g1550 327 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Cam02g1550 327 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam02g1550 327 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Cam02g1550 327 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Cam02g1550 327 Gene3D - 222 293 - -
Cam02g1550 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 294 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam02g1550 327 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1550 Cam-Chr2:28469564 Cam05g1932 Cam-Chr5:28245587 3.60E-64 dispersed
Cam02g1550 Cam-Chr2:28469564 Cam05g2746 Cam-Chr5:34728066 1.40E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51523 PF03791 KNOX2 3.80E-21 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1550 - - - 0.0