Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1570 ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCTGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCAAAGAAGTGA 609 44.5 MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28597048 28599436 - CaPI482276_02g015700.1 Cam02g1570 121312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1570 202 Coils Coil 144 181 - -
Cam02g1570 202 Coils Coil 22 42 - -
Cam02g1570 202 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam02g1570 202 MobiDBLite consensus disorder prediction 137 202 - -
Cam02g1570 202 MobiDBLite consensus disorder prediction 27 52 - -
Cam02g1570 202 Gene3D Classic Zinc Finger 78 116 - -
Cam02g1570 202 MobiDBLite consensus disorder prediction 137 183 - -
Cam02g1570 202 Pfam Zinc-finger of C2H2 type 84 108 IPR013087 -
Cam02g1570 202 SUPERFAMILY beta-beta-alpha zinc fingers 79 125 IPR036236 -
Cam02g1570 202 FunFam zinc finger matrin-type protein 2-like 78 116 - -
Cam02g1570 202 Coils Coil 116 136 - -
Cam02g1570 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 8 202 IPR040107 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0005681(InterPro)|GO:0046540(PANTHER)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51525 PF12171 zf-C2H2_jaz 1.80E-06 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1570 K12848 - csv:101206387 326.25