Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1577 ATGATTGGCATGCACTCTATCTCAAATCCTTCCACTCCTCCCGAGTTCGAAGAGTTTTGGAATTCTTTCCAACGAGAATTCGAGCTCTTCCTCCCTCTCCCCATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTGTTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATATTCTACAAATTAGACAATCAAGCCTTCAATGCTTCGAAAATGCTGAGTTCTGATTTTGGAGTTCGTTAA 1113 44.56 MIGMHSISNPSTPPEFEEFWNSFQREFELFLPLPMASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIIFYKLDNQAFNASKMLSSDFGVR 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28666951 28673020 - CaPI482276_02g015770.1 Cam02g1577 121319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1577 370 SUPERFAMILY t-snare proteins 112 322 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam02g1577 370 ProSitePatterns Syntaxin / epimorphin family signature. 273 312 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam02g1577 370 Pfam SNARE domain 303 349 IPR000727 -
Cam02g1577 370 CDD SNARE_syntaxin16 271 328 - -
Cam02g1577 370 SMART tSNARE_6 262 329 IPR000727 -
Cam02g1577 370 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 267 329 IPR000727 -
Cam02g1577 370 FunFam Syntaxin-43 113 321 - -
Cam02g1577 370 PANTHER SYNTAXIN 125 346 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam02g1577 370 Gene3D - 113 321 - -
Cam02g1577 370 SMART SynN_4 107 222 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1577 Cam-Chr2:28666951 Cam09g0545 Cam-Chr9:5464802 9.30E-101 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1577 K08489 - csv:101207998 551.206