Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1763 ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCATAACCACCCGCCGGAGACCGAAGCCTCTCAACTTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCAGGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCACCTCCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACAACAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA 1284 55.61 MASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPPETEASQLHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDQGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPPPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEQQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30763674 30769373 - CaPI482276_02g017630.1 Cam02g1763 121505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1763 427 Gene3D - 229 291 IPR036638 GO:0046983(InterPro)
Cam02g1763 427 MobiDBLite consensus disorder prediction 178 203 - -
Cam02g1763 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Cam02g1763 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 292 IPR036638 GO:0046983(InterPro)
Cam02g1763 427 MobiDBLite consensus disorder prediction 22 43 - -
Cam02g1763 427 MobiDBLite consensus disorder prediction 387 427 - -
Cam02g1763 427 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Cam02g1763 427 MobiDBLite consensus disorder prediction 22 39 - -
Cam02g1763 427 MobiDBLite consensus disorder prediction 178 241 - -
Cam02g1763 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 378 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam02g1763 427 FunFam Transcription factor bHLH66 231 296 - -
Cam02g1763 427 MobiDBLite consensus disorder prediction 304 341 - -
Cam02g1763 427 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1763 Cam-Chr2:30763674 Cam08g1357 Cam-Chr8:19864043 5.70E-17 dispersed
Cam03g1356 Cam-Chr3:27637086 Cam02g1763 Cam-Chr2:30763674 3.90E-11 transposed
Cam03g1654 Cam-Chr3:31655330 Cam02g1763 Cam-Chr2:30763674 4.00E-44 transposed
Cam06g1362 Cam-Chr6:25018314 Cam02g1763 Cam-Chr2:30763674 8.50E-82 transposed
Cam07g0017 Cam-Chr7:1376871 Cam02g1763 Cam-Chr2:30763674 9.00E-18 transposed
Cam07g1691 Cam-Chr7:31606061 Cam02g1763 Cam-Chr2:30763674 2.80E-09 transposed
Cam08g0021 Cam-Chr8:559312 Cam02g1763 Cam-Chr2:30763674 9.00E-13 transposed
Cam09g0429 Cam-Chr9:4580578 Cam02g1763 Cam-Chr2:30763674 5.40E-12 transposed
Cam09g0728 Cam-Chr9:7333586 Cam02g1763 Cam-Chr2:30763674 1.10E-44 transposed
Cam10g1695 Cam-Chr10:30970166 Cam02g1763 Cam-Chr2:30763674 8.60E-14 transposed
Cam01g2297 Cam-Chr1:35172402 Cam02g1763 Cam-Chr2:30763674 1.30E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51533 PF00010 HLH 1.60E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1763 - - - 0.0