Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1764 ATGGCGGGTAATGGGGTTTTTGCAGAGATTCTCGATGGTGAAGTCTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAAACCGTTGCCATTATCAACCCCACTACAAGGAAGACTCAGTACAGAGTTCAAGCTTGCAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAACTGCTCAAAAATCATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCAGTGACTGAGGTCGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATTTGGCTGTTTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTCATTAGTTGTGTCACTGGAAAAGGTTCCGAGATCGGTGATTTCCTCACTATGCATCCGGGTGTCGACTGTATAAGCTTTACCGGTGGGGATACTGGTATTGCAATTTCGAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTTGCTGCTAATATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTAAAGGTTGTTTTGGTAATGGAGTCCGTCGCAGATGCTTTGGTCGAGAAAGTAAAGGCACGGGTGGCTAAATTAACCGTTGGTGCTCCTGAAGACGACTCAGACATTACTCCAGTTGTGACCGAGTCGTCAGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATTTGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTCTTGCCAGTCATTAGGATCAGTTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTATTCACAAAGGACATCAACAAGGCGATATTGATAAGTGACGCAATGGAAACTGGAACAGTTCAAATCAACTCTGCACCTGCTCGAGGACCTGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCAACACCTTCCTACACCATGGGAACCAAGTCAGTTAGTAAGAGAGCCCTAGGGTCCAAATTGTGA 1530 45.36 MAGNGVFAEILDGEVYKYYSEGEWKKSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKSVSKRALGSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30774757 30779873 - CaPI482276_02g017640.1 Cam02g1764 121506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1764 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Cam02g1764 509 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491(InterPro)
Cam02g1764 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Cam02g1764 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Cam02g1764 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Cam02g1764 509 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Cam02g1764 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Cam02g1764 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Cam02g1764 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
Cam02g1764 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1764 K00131 - - csv:101208699 961.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1764 Cam-Chr2:30774757 Cam06g0457 Cam-Chr6:6693669 6.90E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1135 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 3.9e-211 731.1
Cam02g1724 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cam06g1838 . 69 553 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cam06g1838 . 1 553 Aldehyde Dehydrogenase Gene Family AT3G48000 75.8 2.7e-250 861.3
Cam02g1724 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cam06g1135 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 8.9e-161 563.9
Cam02g1724 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cam06g1838 . 48 397 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cam06g1135 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cam11g1604 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.6e-181 632.9
Cam11g1605 . 7 574 Aldehyde Dehydrogenase Gene Family AT4G34240 53.2 2.7e-165 578.9
Cam11g1604 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 6.3e-178 620.5
Cam11g1605 . 157 572 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 7.0e-177 617.1
Cam02g2404 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Cam07g0921 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 6.9e-116 414.5
Cam07g0921 . 27 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.6 2.3e-184 642.1
Cam02g2404 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cam02g1941 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 1.4e-214 742.7
Cam09g1553 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cam01g1872 . 197 631 Aldehyde Dehydrogenase Gene Family AT2G14170 67.8 1.1e-180 630.2
Cam06g1817 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 6.6e-251 863.2
Cam06g1817 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 2.2e-254 874.8
Cam02g1764 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Cam01g1495 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.2 2.1e-261 898.3
Cam06g0457 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.4e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40