Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1872 ATGCGAAAATTTAATTCCGTGTGTCAGAGCAAGAAAGAGAAGAGCTGGAAGGGCAGAAGACATCGAATATCCGTCTTGATCCTGAAGCCTTTCTCCTTCCTTCTTTATCTCTTCCCTATAAAGCCGCAGTTTCTGCAGTCACACTTCTTTCCAAGATCATCATCATCATCATCATCATCTGCTTCTTCATCGTCGTCGTCATCTTCGTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGTAATGAAATTCGAAGAGCAGAACCTGAAGCATCAATCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCAGTATTTCGTCGCTACTCGTAATGGAAGCTTCCGAAGACTGCGACAGGGACGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCAATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCGGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAAAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGCTGTATGCTCATCTCTATCTCTGGTTCCTTCCAAGACGAAAGCTCGAAGCTCAGTGGAAAAAGTGTACTGGAAACTGGGCCTTCTTTATATGAAATGATTATTAACATTATGGAATTTCAGTCTCTTGATAAAAATGATTGGAGTGGCATTTCAAAGTTGGTGGTGCTTATGCGGTGTAAACTTCGCTGGAGTTCTTCCTCAGTGAGCCTGGCTGGTGCTTAA 1125 44.0 MRKFNSVCQSKKEKSWKGRRHRISVLILKPFSFLLYLFPIKPQFLQSHFFPRSSSSSSSSASSSSSSSSSSSSSSSSSSSSSSSSSSAVMKFEEQNLKHQSEQMCRTIEVDTIDHHRSISSLLVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESNKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSKSCMLISISGSFQDESSKLSGKSVLETGPSLYEMIINIMEFQSLDKNDWSGISKLVVLMRCKLRWSSSSVSLAGA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31755175 31758788 - CaPI482276_02g018720.1 Cam02g1872 121614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1872 374 Pfam Tyrosine phosphatase family 139 290 IPR004861 -
Cam02g1872 374 PANTHER TYROSINE-PROTEIN PHOSPHATASE 83 295 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cam02g1872 374 ProSitePatterns Tyrosine specific protein phosphatases active site. 234 244 IPR016130 GO:0016311(InterPro)
Cam02g1872 374 Gene3D Protein tyrosine phosphatase superfamily 139 288 IPR029021 -
Cam02g1872 374 CDD PFA-DSP_Siw14 138 285 - -
Cam02g1872 374 PRINTS Plant and fungal dual specificity phosphatase signature 176 189 IPR020428 GO:0016791(InterPro)
Cam02g1872 374 PRINTS Plant and fungal dual specificity phosphatase signature 195 209 IPR020428 GO:0016791(InterPro)
Cam02g1872 374 PRINTS Plant and fungal dual specificity phosphatase signature 139 156 IPR020428 GO:0016791(InterPro)
Cam02g1872 374 PRINTS Plant and fungal dual specificity phosphatase signature 212 226 IPR020428 GO:0016791(InterPro)
Cam02g1872 374 ProSiteProfiles Dual specificity protein phosphatase domain profile. 144 298 IPR020422 GO:0006470(InterPro)
Cam02g1872 374 FunFam probable tyrosine-protein phosphatase At1g05000 138 288 - -
Cam02g1872 374 MobiDBLite consensus disorder prediction 57 85 - -
Cam02g1872 374 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 207 247 IPR000387 GO:0016311(InterPro)
Cam02g1872 374 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 140 286 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1077 Cam-Chr3:19925367 Cam02g1872 Cam-Chr2:31755175 2.40E-63 transposed
Cam02g1872 Cam-Chr2:31755175 Cam09g1098 Cam-Chr9:11462246 5.70E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1872 K18045 - csv:101222170 416.387