Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1874 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCAGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTACATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTTTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGACAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGCTACCTCAAGCTAGGCCCGGTGCTTTGGGTTCTGGAGGCACTCCATTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGCGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCCATTCTTCCCAATCTTGGTTACAATTCTGTCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACACTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAACGGCACCTGCAAGTATGGATCTGATTGCAAATTCCATCATCCAAAACAAAGAATTGCACAATCAGCAACTAATGCGCTTGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGATCTGCAAGTACGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACTTTGCCCCAAACATTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCATCGAACAACAAATGCCGAACTACCGATTCGAAAGTCGTAGTAGAGAGCACAGCTGAAGAGGCGACCTCTGTTTCATGCTCATTACCAGGTGGTTCAGAAACTTTGCAAGATCAATCTGGTTGA | 1311 | 44.55 | MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPILPNLGYNSVNLEESYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGICKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMSSHETLPQTLSKSSEWVQKADPSNNKCRTTDSKVVVESTAEEATSVSCSLPGGSETLQDQSG | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31802300 | 31805891 | + | CaPI482276_02g018740.1 | Cam02g1874 | 121616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1874 | 436 | Gene3D | - | 43 | 121 | - | - | |
Cam02g1874 | 436 | Gene3D | - | 274 | 353 | - | - | |
Cam02g1874 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | Gene3D | - | 122 | 170 | - | - | |
Cam02g1874 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SUPERFAMILY | CCCH zinc finger | 322 | 347 | IPR036855 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 347 | IPR050974 | GO:0003729(PANTHER) | |
Cam02g1874 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872(InterPro) | |
Cam02g1874 | 436 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1874 | Cam-Chr2:31802300 | Cam03g0338 | Cam-Chr3:4584671 | 5.00E-21 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51543 | PF00642 | zf-CCCH | 8.10E-09 | CL0537 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1874 | - | - | - | 0.0 |