Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1887 ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAAGTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTAGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTGGATAGAAGGAACAATGTTGTAAGGGGAAAGCAAACGTACCGTACGTACGGTTTGGTTTCGGTATTTGTGCCCTTGGGGTTTTCGGCCGATATCCGAAATTCAACAAATAGCCGTCCGTCGTCGTCTCAAATCGGTGCTAAACCCTGTATCTTTATGCGTAGCTCAAAGAGGACGAGGTCTGAAGAAGGTCAAAATGATTGGATTAGTCAGCTTCCGGAATCTGTTCTTGTTGACATTCTTTCGTATTTACCAACAAAGGATGCTGTAAAGATGACATTGATTTCAAGATTCAGGAATCTTTGGACCTATATTCGTTGTCTCTCCTTTGATGAATGTGCATATCATGACCACAGTAGTTATGATGGTGAAAATTATGATGGTCCACATTATGATGAAAGTTTCCTAAATCTAATTCGTCATGTCTTGATACTTCATGAACGTACTACAATTGATGAGTTTCATCTCAAATTTGCTTTCAATTTGTTTAATGCTATTCATGATGATCATTATAATTCTGATGGTTATGCATCCAAAGAAAGACGAATGGCAAGTGAGCTTACTACATGGATTAAATTTTCTTTGAGGAAACAAGTTAAGGTTCTTGATATTGATTTATTAGGATGTGGTTTGTCAGAGCCAGAAGTAAATTATGAACTGCCTACTAGTATTTTAACTAATAACTATCTAAAGGAGCTCAGTTTGGCTGGCTGCGGAATCGAGGAAAAAGGGCGTATTCATCTGACGTCTCTCACTATGCTTTCGCTCAAGGAAATAATATTGAGTGATAAGATTATGGGTGAAATCATTGTAGGATGCCCAATGCTTGAAGAACTTTCTCTTGATGGATGTTGTGGTCTTCGTAAGCTGAAGTTGACTACTTCTAATATCAAGAGATTGAGGATTTTTATTGGATGGAGAAATGAAGTGGCAAATTCAAGGTTGGAGATTAGCTGCCCTGGTCTCAAATCATTAGAACTTGCTGGATCAATACAGCTTGTACAGTTAAAGTATTCATCTTCTATTTCCGACGCCTCCCTTTATTATAGCCGCACCTTCATGTGCGAACGCATGATATATGAAAAAGTTCAAATGCTGCTGTGGAAACTAGCTGAAGTCAATGTTTTCATACCATGCACATGGACTATTTTGATCTTCACAATATGGGAGTTGACATATGTGCCAATTCCTGTCACTGGTTGGAAATCTGTAGAGTTCAGACTTCTTTTCACAAAGTGGCACCTGCCTGGAATATGCAGCATTCTCAGGAATTCACATTGGTTGGAAACACTGACTTTCTACATTTACCCAGGATCATACTCTACATTCTTGACTGAGGAAGCAAAGTGGATGGAGGCATATGAATTTGATGGTAAAGATTACTGGAAGTCACAGAATGGCGATTACCGTGGCCTCAGAAAGTACCTCAAGACAGTTATGATATACGGATATGTGACTGAGCCATATGTGTTGGAGCTTGTAGAATTTCTATTGAAGAATGCCTTGGTCCTTGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTCTTTGATCAGGAGGATCATTTCACTCCTGGGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTTTTCCCAGGGCCTCCAAGTCTGCTGTAATTCAGTTCTGCTAA 2568 40.42 MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGILGAELQKHQQSKKRKMWKVNELLVEEWTEVERDEKNNMKKKVKVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVRGKQTYRTYGLVSVFVPLGFSADIRNSTNSRPSSSQIGAKPCIFMRSSKRTRSEEGQNDWISQLPESVLVDILSYLPTKDAVKMTLISRFRNLWTYIRCLSFDECAYHDHSSYDGENYDGPHYDESFLNLIRHVLILHERTTIDEFHLKFAFNLFNAIHDDHYNSDGYASKERRMASELTTWIKFSLRKQVKVLDIDLLGCGLSEPEVNYELPTSILTNNYLKELSLAGCGIEEKGRIHLTSLTMLSLKEIILSDKIMGEIIVGCPMLEELSLDGCCGLRKLKLTTSNIKRLRIFIGWRNEVANSRLEISCPGLKSLELAGSIQLVQLKYSSSISDASLYYSRTFMCERMIYEKVQMLLWKLAEVNVFIPCTWTILIFTIWELTYVPIPVTGWKSVEFRLLFTKWHLPGICSILRNSHWLETLTFYIYPGSYSTFLTEEAKWMEAYEFDGKDYWKSQNGDYRGLRKYLKTVMIYGYVTEPYVLELVEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVFDQEDHFTPGELLQFSQKLLTFPRASKSAVIQFC 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31923394 31929081 - CaPI482276_02g018870.1 Cam02g1887 121629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1887 855 CDD F-box_AtFBL13-like 362 396 IPR053781 -
Cam02g1887 855 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Cam02g1887 855 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 ProSiteProfiles F-box domain profile. 359 390 IPR001810 GO:0005515(InterPro)
Cam02g1887 855 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 289 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cam02g1887 855 Gene3D Ribonuclease Inhibitor 468 671 IPR032675 -
Cam02g1887 855 MobiDBLite consensus disorder prediction 107 122 - -
Cam02g1887 855 SUPERFAMILY F-box domain 358 418 IPR036047 GO:0005515(InterPro)
Cam02g1887 855 Coils Coil 120 161 - -
Cam02g1887 855 Gene3D - 9 105 IPR036388 -
Cam02g1887 855 Pfam FBD 766 802 IPR006566 -
Cam02g1887 855 SMART 9598neu4hmm 763 855 IPR006566 -
Cam02g1887 855 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 SMART hsfneu3 11 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g1887 855 FunFam Heat shock transcription factor 1 8 105 - -
Cam02g1887 855 MobiDBLite consensus disorder prediction 107 128 - -
Cam02g1887 855 SUPERFAMILY RNI-like 507 724 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1887 K09419 - - csv:101209866 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1887 Cam-Chr2:31923394 Cam10g0138 Cam-Chr10:2998688 6.60E-49 dispersed
Cam06g1916 Cam-Chr6:30122864 Cam02g1887 Cam-Chr2:31923394 1.00E-06 transposed
Cam07g1214 Cam-Chr7:26504928 Cam02g1887 Cam-Chr2:31923394 6.30E-10 transposed
Cam01g2455 Cam-Chr1:36356974 Cam02g1887 Cam-Chr2:31923394 2.40E-49 wgd
Cam02g1887 Cam-Chr2:31923394 Cam03g0699 Cam-Chr3:7880418 1.20E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51545 PF00447 HSF_DNA-bind 7.30E-31 CL0123 Cam TF