Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1896 ATGATATTTAGGGCCACAAGACATCACTCATTCGGCCTTCTACGTTTCAGACTTCAGAGAAACCGAAACCCCGCTCCCTCTCCATTTTCTGATCAAAACCACTCTCGCCGGACCGCTCTCTGTCTCTCCGCCGTCCCTCGCGGTCGTTTTCCTCTAGACCTTCTGGTGCTAATATTTGATTTGAAGTCGCGGACCTTCAGGCACATATCACTTGATGTTCTAGGAATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTGTATTACACCAAGTGGTTGAAGGGGAGTGCCTTCCTTTGCTCTCCCTCAGTTCATAGTCCTCTTATTCCTCGGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTTAAGCATAACATTCGTAATATGTCGGTTATTGCTCACGTCGATCATGGGAAGTCAACACTTACGGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTTGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACTGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTTGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTTGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 3522 46.73 MIFRATRHHSFGLLRFRLQRNRNPAPSPFSDQNHSRRTALCLSAVPRGRFPLDLLVLIFDLKSRTFRHISLDVLGMSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLKGSAFLCSPSVHSPLIPRVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31993517 32003594 + CaPI482276_02g018960.1 Cam02g1896 121638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1896 1173 FunFam Translation elongation factor 2 333 567 - -
Cam02g1896 1173 CDD eEF2_snRNP_like_C 1057 1135 - -
Cam02g1896 1173 Pfam Elongation factor G, domain IV 940 1052 IPR005517 GO:0005525(InterPro)
Cam02g1896 1173 SUPERFAMILY Translation proteins 672 806 IPR009000 -
Cam02g1896 1173 Pfam Elongation factor Tu GTP binding domain 348 551 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 CDD EF2 350 560 - -
Cam02g1896 1173 SUPERFAMILY Winged helix DNA-binding domain 103 164 IPR036390 -
Cam02g1896 1173 Gene3D - 900 1052 IPR014721 -
Cam02g1896 1173 FunFam Translation elongation factor 2 673 814 - -
Cam02g1896 1173 Pfam Elongation factor Tu domain 2 724 792 IPR004161 GO:0005525(InterPro)
Cam02g1896 1173 CDD EF2_snRNP_III 817 889 - -
Cam02g1896 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 671 IPR027417 -
Cam02g1896 1173 FunFam Translation elongation factor 2 816 893 - -
Cam02g1896 1173 MobiDBLite consensus disorder prediction 78 97 - -
Cam02g1896 1173 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 347 674 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 FunFam Translation elongation factor 2 1053 1173 - -
Cam02g1896 1173 PRINTS GTP-binding elongation factor signature 483 492 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 PRINTS GTP-binding elongation factor signature 431 441 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 PRINTS GTP-binding elongation factor signature 351 364 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 PRINTS GTP-binding elongation factor signature 447 458 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 PRINTS GTP-binding elongation factor signature 395 403 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1896 1173 Gene3D - 1053 1173 - -
Cam02g1896 1173 Pfam Elongation Factor G, domain III 817 879 IPR041095 -
Cam02g1896 1173 CDD EF2_II 705 800 - -
Cam02g1896 1173 Gene3D Translation factors 673 814 - -
Cam02g1896 1173 SUPERFAMILY Ribosomal protein S5 domain 2-like 892 1056 IPR020568 -
Cam02g1896 1173 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 388 403 IPR031157 -
Cam02g1896 1173 Gene3D - 102 165 IPR036388 -
Cam02g1896 1173 NCBIfam small GTP-binding protein domain 350 506 IPR005225 GO:0005525(InterPro)
Cam02g1896 1173 SMART EFG_IV_2 936 1052 IPR005517 GO:0005525(InterPro)
Cam02g1896 1173 Gene3D - 333 567 IPR027417 -
Cam02g1896 1173 Gene3D Elongation Factor G (Translational Gtpase), domain 3 816 893 - -
Cam02g1896 1173 Pfam RNA polymerase Rpc34 subunit 205 313 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cam02g1896 1173 Pfam RNA polymerase Rpc34 subunit 102 202 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cam02g1896 1173 SUPERFAMILY EF-G C-terminal domain-like 814 890 IPR035647 -
Cam02g1896 1173 SMART EFG_C_a 1054 1143 IPR000640 -
Cam02g1896 1173 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 333 1172 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cam02g1896 1173 SUPERFAMILY EF-G C-terminal domain-like 1057 1168 IPR035647 -
Cam02g1896 1173 CDD aeEF2_snRNP_like_IV 889 1061 - -
Cam02g1896 1173 FunFam Translation elongation factor 2 899 1052 - -
Cam02g1896 1173 Pfam Elongation factor G C-terminus 1054 1140 IPR000640 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1774 Cam-Chr2:30893162 Cam02g1896 Cam-Chr2:31993517 1.00E-167 dispersed
Cam02g1896 Cam-Chr2:31993517 Cam02g1913 Cam-Chr2:32188200 0.00E+00 dispersed
Cam02g1896 Cam-Chr2:31993517 Cam02g1897 Cam-Chr2:32010283 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1896 K03234 - csv:101209544 1650.57