Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1897 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACACGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCCAAGAGTGTGAACATTACTAAAGGAACTTTCTGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCGTTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACGTTTCGGCAAATAATTAGAAGCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCTCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGTCAGTATGCTCTTCTCTTGACGATGTTAATTTTGCGATCTGGAAAGTACTTTTTCACTTTAATAATCATCTTTAATCTTTTCTGTGTTCAGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTTGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCGCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACTGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTTGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTTGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 4137 46.22 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFCSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKRYALGIQELIQECWDENPHKRPTFRQIIRSPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLSVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGQYALLLTMLILRSGKYFFTLIIIFNLFCVQVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32010283 32024595 + CaPI482276_02g018970.1 Cam02g1897 121639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1897 1378 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 552 879 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cam02g1897 1378 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cam02g1897 1378 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Cam02g1897 1378 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cam02g1897 1378 CDD EF2_II 910 1005 - -
Cam02g1897 1378 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 538 1377 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cam02g1897 1378 Pfam Elongation factor Tu GTP binding domain 553 756 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 FunFam Translation elongation factor 2 1104 1257 - -
Cam02g1897 1378 SUPERFAMILY Translation proteins 877 1011 IPR009000 -
Cam02g1897 1378 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1021 1098 - -
Cam02g1897 1378 FunFam Integrin-linked protein kinase family 232 416 - -
Cam02g1897 1378 Gene3D - 34 140 IPR036770 -
Cam02g1897 1378 Pfam Elongation Factor G, domain III 1022 1084 IPR041095 -
Cam02g1897 1378 CDD eEF2_snRNP_like_C 1262 1340 - -
Cam02g1897 1378 SUPERFAMILY EF-G C-terminal domain-like 1019 1095 IPR035647 -
Cam02g1897 1378 SMART EFG_C_a 1259 1348 IPR000640 -
Cam02g1897 1378 CDD aeEF2_snRNP_like_IV 1094 1266 - -
Cam02g1897 1378 FunFam Translation elongation factor 2 1258 1378 - -
Cam02g1897 1378 Gene3D - 1258 1378 - -
Cam02g1897 1378 FunFam Integrin-linked protein kinase family 24 147 - -
Cam02g1897 1378 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cam02g1897 1378 FunFam Translation elongation factor 2 1021 1098 - -
Cam02g1897 1378 SUPERFAMILY Ribosomal protein S5 domain 2-like 1097 1261 IPR020568 -
Cam02g1897 1378 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 593 608 IPR031157 -
Cam02g1897 1378 Pfam Elongation factor Tu domain 2 929 997 IPR004161 GO:0005525(InterPro)
Cam02g1897 1378 Gene3D - 538 772 IPR027417 -
Cam02g1897 1378 Pfam Elongation factor G, domain IV 1145 1257 IPR005517 GO:0005525(InterPro)
Cam02g1897 1378 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Cam02g1897 1378 CDD STKc_MAP3K-like 162 412 - -
Cam02g1897 1378 FunFam Translation elongation factor 2 878 1019 - -
Cam02g1897 1378 CDD EF2 555 765 - -
Cam02g1897 1378 SUPERFAMILY EF-G C-terminal domain-like 1262 1373 IPR035647 -
Cam02g1897 1378 Gene3D - 1105 1257 IPR014721 -
Cam02g1897 1378 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Cam02g1897 1378 SUPERFAMILY Protein kinase-like (PK-like) 172 483 IPR011009 -
Cam02g1897 1378 SMART EFG_IV_2 1141 1257 IPR005517 GO:0005525(InterPro)
Cam02g1897 1378 Gene3D Transferase(Phosphotransferase) domain 1 141 425 - -
Cam02g1897 1378 NCBIfam small GTP-binding protein domain 555 710 IPR005225 GO:0005525(InterPro)
Cam02g1897 1378 FunFam Translation elongation factor 2 538 772 - -
Cam02g1897 1378 Pfam Elongation factor G C-terminus 1259 1345 IPR000640 -
Cam02g1897 1378 Pfam Protein tyrosine and serine/threonine kinase 163 413 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1897 1378 SUPERFAMILY Ankyrin repeat 38 131 IPR036770 -
Cam02g1897 1378 Gene3D Translation factors 878 1019 - -
Cam02g1897 1378 ProSiteProfiles Protein kinase domain profile. 98 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1897 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 876 IPR027417 -
Cam02g1897 1378 PRINTS GTP-binding elongation factor signature 636 646 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 PRINTS GTP-binding elongation factor signature 688 697 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 PRINTS GTP-binding elongation factor signature 600 608 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 PRINTS GTP-binding elongation factor signature 652 663 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 PRINTS GTP-binding elongation factor signature 556 569 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g1897 1378 CDD EF2_snRNP_III 1022 1094 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1897 Cam-Chr2:32010283 Cam09g1398 Cam-Chr9:20645108 1.60E-84 dispersed
Cam02g1896 Cam-Chr2:31993517 Cam02g1897 Cam-Chr2:32010283 0.00E+00 tandem
Cam01g0384 Cam-Chr1:4224925 Cam02g1897 Cam-Chr2:32010283 2.30E-40 transposed
Cam02g1774 Cam-Chr2:30893162 Cam02g1897 Cam-Chr2:32010283 1.00E-167 transposed
Cam02g1913 Cam-Chr2:32188200 Cam02g1897 Cam-Chr2:32010283 0.00E+00 transposed
Cam04g0394 Cam-Chr4:14965764 Cam02g1897 Cam-Chr2:32010283 1.00E-20 transposed
Cam06g0260 Cam-Chr6:4467854 Cam02g1897 Cam-Chr2:32010283 1.70E-32 transposed
Cam09g1054 Cam-Chr9:10895394 Cam02g1897 Cam-Chr2:32010283 2.60E-116 transposed
Cam09g1884 Cam-Chr9:33525843 Cam02g1897 Cam-Chr2:32010283 5.10E-21 transposed
Cam10g1636 Cam-Chr10:30192048 Cam02g1897 Cam-Chr2:32010283 4.20E-22 transposed
Cam01g2466 Cam-Chr1:36405536 Cam02g1897 Cam-Chr2:32010283 7.70E-129 wgd
Cam02g1897 Cam-Chr2:32010283 Cam03g0708 Cam-Chr3:7946365 2.90E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84982 PF00009 GTP_EFTU 6.20E-66 CL0023 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1897 K03234 - csv:101209544 1650.57