Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1899 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTTACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCCAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAGATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 699 41.92 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32038619 32045955 + CaPI482276_02g018990.1 Cam02g1899 121641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1899 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 Coils Coil 81 108 - -
Cam02g1899 232 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam02g1899 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam02g1899 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam02g1899 232 Coils Coil 125 145 - -
Cam02g1899 232 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Cam02g1899 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam02g1899 232 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1899 Cam-Chr2:32038619 Cam08g0041 Cam-Chr8:947872 1.20E-66 dispersed
Cam01g2468 Cam-Chr1:36419336 Cam02g1899 Cam-Chr2:32038619 6.40E-69 wgd
Cam02g1899 Cam-Chr2:32038619 Cam03g0710 Cam-Chr3:7970071 2.60E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51546 PF01486 K-box 2.70E-25 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1899 K09264 - csv:101217987 406.371