Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1899 | ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTTACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCCAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAGATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA | 699 | 41.92 | MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32038619 | 32045955 | + | CaPI482276_02g018990.1 | Cam02g1899 | 121641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1899 | 232 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | Coils | Coil | 81 | 108 | - | - | |
Cam02g1899 | 232 | Gene3D | - | 14 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | SUPERFAMILY | SRF-like | 2 | 73 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | Pfam | K-box region | 87 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam02g1899 | 232 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam02g1899 | 232 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cam02g1899 | 232 | Coils | Coil | 125 | 145 | - | - | |
Cam02g1899 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | FunFam | agamous-like MADS-box protein AGL11 | 13 | 97 | - | - | |
Cam02g1899 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam02g1899 | 232 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1899 | Cam-Chr2:32038619 | Cam08g0041 | Cam-Chr8:947872 | 1.20E-66 | dispersed | |
Cam01g2468 | Cam-Chr1:36419336 | Cam02g1899 | Cam-Chr2:32038619 | 6.40E-69 | wgd | |
Cam02g1899 | Cam-Chr2:32038619 | Cam03g0710 | Cam-Chr3:7970071 | 2.60E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51546 | PF01486 | K-box | 2.70E-25 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1899 | K09264 | - | csv:101217987 | 406.371 |