Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1919 ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCGATGGTGTACGAGGCAAATGCAAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCGTCCTCCTGCAACCCGACTGCAGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.34 MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32276117 32278274 + CaPI482276_02g019190.1 Cam02g1919 121661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1919 173 Coils Coil 94 114 - -
Cam02g1919 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cam02g1919 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
Cam02g1919 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cam02g1919 173 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1919 Cam-Chr2:32276117 Cam07g0466 Cam-Chr7:6456415 2.60E-45 dispersed
Cam01g0918 Cam-Chr1:11049670 Cam02g1919 Cam-Chr2:32276117 3.00E-57 transposed
Cam02g1055 Cam-Chr2:16698609 Cam02g1919 Cam-Chr2:32276117 4.80E-18 transposed
Cam02g1919 Cam-Chr2:32276117 Cam09g2292 Cam-Chr9:37390670 2.60E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51551 PF03195 LOB 1.00E-43 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1919 - - - 0.0