Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1919 | ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCGATGGTGTACGAGGCAAATGCAAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCGTCCTCCTGCAACCCGACTGCAGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG | 522 | 51.34 | MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32276117 | 32278274 | + | CaPI482276_02g019190.1 | Cam02g1919 | 121661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1919 | 173 | Coils | Coil | 94 | 114 | - | - | |
Cam02g1919 | 173 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
Cam02g1919 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 14 | 134 | - | - | |
Cam02g1919 | 173 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Cam02g1919 | 173 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1919 | Cam-Chr2:32276117 | Cam07g0466 | Cam-Chr7:6456415 | 2.60E-45 | dispersed | |
Cam01g0918 | Cam-Chr1:11049670 | Cam02g1919 | Cam-Chr2:32276117 | 3.00E-57 | transposed | |
Cam02g1055 | Cam-Chr2:16698609 | Cam02g1919 | Cam-Chr2:32276117 | 4.80E-18 | transposed | |
Cam02g1919 | Cam-Chr2:32276117 | Cam09g2292 | Cam-Chr9:37390670 | 2.60E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51551 | PF03195 | LOB | 1.00E-43 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1919 | - | - | - | 0.0 |