Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1922 GAATGGTGGGATAATTTTGGTCAATCAACTCCAAACTTGCAAAAGTTTGCCGTGAGCATTTTAAGTCTTACTTGTAGTGCCTCCAGATGCGAATGTAATTGGAGTGTGTTTGAGCAGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCTGTAGCAGACAATCATGCACTTGGTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAATTGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATATAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCGAACAGTCGCAAGAGAGGCAGGGAACTCACAGGATAA 1458 42.52 EWWDNFGQSTPNLQKFAVSILSLTCSASRCECNWSVFEQTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRQEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKIIEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNIDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32305307 32309490 - CaPI482276_02g019220.1 Cam02g1922 121664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1922 485 Gene3D - 111 211 - -
Cam02g1922 485 MobiDBLite consensus disorder prediction 397 413 - -
Cam02g1922 485 Pfam Cyclin-T2-like, C-terminal domain 114 201 - -
Cam02g1922 485 Pfam hAT family C-terminal dimerisation region 1 41 IPR008906 GO:0046983(InterPro)
Cam02g1922 485 SMART cyclin_7 116 201 IPR013763 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 397 485 - -
Cam02g1922 485 FunFam Cyclin-T1-5 like 111 215 - -
Cam02g1922 485 SUPERFAMILY Cyclin-like 112 208 IPR036915 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 218 235 - -
Cam02g1922 485 CDD CYCLIN_AcCycT_rpt2 112 204 - -
Cam02g1922 485 MobiDBLite consensus disorder prediction 420 442 - -
Cam02g1922 485 PANTHER CYCLIN 34 373 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Cam02g1922 485 MobiDBLite consensus disorder prediction 252 272 - -
Cam02g1922 485 Pfam Cyclin, N-terminal domain 25 110 IPR006671 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 443 457 - -
Cam02g1922 485 SUPERFAMILY Ribonuclease H-like 1 41 IPR012337 -
Cam02g1922 485 SUPERFAMILY Cyclin-like 39 111 IPR036915 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 207 285 - -
Cam02g1922 485 Gene3D - 23 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1922 K15188 - - csv:101220862 816.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0915 Cam-Chr1:10962376 Cam02g1922 Cam-Chr2:32305307 2.90E-116 dispersed
Cam02g1922 Cam-Chr2:32305307 Cam08g1953 Cam-Chr8:25447772 1.50E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81