Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1922 GAATGGTGGGATAATTTTGGTCAATCAACTCCAAACTTGCAAAAGTTTGCCGTGAGCATTTTAAGTCTTACTTGTAGTGCCTCCAGATGCGAATGTAATTGGAGTGTGTTTGAGCAGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCTGTAGCAGACAATCATGCACTTGGTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAATTGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATATAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCGAACAGTCGCAAGAGAGGCAGGGAACTCACAGGATAA 1458 42.52 EWWDNFGQSTPNLQKFAVSILSLTCSASRCECNWSVFEQTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRQEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKIIEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNIDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32305307 32309490 - CaPI482276_02g019220.1 Cam02g1922 121664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1922 485 Gene3D - 111 211 - -
Cam02g1922 485 MobiDBLite consensus disorder prediction 397 413 - -
Cam02g1922 485 Pfam Cyclin-T2-like, C-terminal domain 114 201 - -
Cam02g1922 485 Pfam hAT family C-terminal dimerisation region 1 41 IPR008906 GO:0046983(InterPro)
Cam02g1922 485 SMART cyclin_7 116 201 IPR013763 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 397 485 - -
Cam02g1922 485 FunFam Cyclin-T1-5 like 111 215 - -
Cam02g1922 485 SUPERFAMILY Cyclin-like 112 208 IPR036915 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 218 235 - -
Cam02g1922 485 CDD CYCLIN_AcCycT_rpt2 112 204 - -
Cam02g1922 485 MobiDBLite consensus disorder prediction 420 442 - -
Cam02g1922 485 PANTHER CYCLIN 34 373 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Cam02g1922 485 MobiDBLite consensus disorder prediction 252 272 - -
Cam02g1922 485 Pfam Cyclin, N-terminal domain 25 110 IPR006671 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 443 457 - -
Cam02g1922 485 SUPERFAMILY Ribonuclease H-like 1 41 IPR012337 -
Cam02g1922 485 SUPERFAMILY Cyclin-like 39 111 IPR036915 -
Cam02g1922 485 MobiDBLite consensus disorder prediction 207 285 - -
Cam02g1922 485 Gene3D - 23 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0915 Cam-Chr1:10962376 Cam02g1922 Cam-Chr2:32305307 2.90E-116 dispersed
Cam02g1922 Cam-Chr2:32305307 Cam08g1953 Cam-Chr8:25447772 1.50E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1922 K15188 - csv:101220862 816.224