Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1923 ATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAAGCGATGTATGAAAATAGTGATGCAAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATTCTCACCTTCTAAACAAGATGGGATTGACTTGAAGAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGG 315 39.37 MHMENLSSSDPSHQAMYENSDAKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32317903 32319195 - CaPI482276_02g019230.1 Cam02g1923 121665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1923 105 MobiDBLite consensus disorder prediction 1 21 - -
Cam02g1923 105 Pfam Cyclin, N-terminal domain 37 103 IPR006671 -
Cam02g1923 105 Gene3D - 22 105 - -
Cam02g1923 105 PANTHER CYCLIN 31 104 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Cam02g1923 105 SUPERFAMILY Cyclin-like 32 104 IPR036915 -
Cam02g1923 105 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1923 K15188 - - csv:101220862 216.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1923 Cam-Chr2:32317903 Cam08g1953 Cam-Chr8:25447772 3.70E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81