Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1929 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGTAA 465 45.59 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32383799 32386635 + CaPI482276_02g019290.1 Cam02g1929 121671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1929 154 FunFam Polyubiquitin 3 1 76 - -
Cam02g1929 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Cam02g1929 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cam02g1929 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cam02g1929 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cam02g1929 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cam02g1929 154 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cam02g1929 154 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cam02g1929 154 Pfam Ubiquitin family 79 149 IPR000626 GO:0005515(InterPro)
Cam02g1929 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cam02g1929 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cam02g1929 154 Gene3D - 78 153 - -
Cam02g1929 154 Gene3D - 1 77 - -
Cam02g1929 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cam02g1929 154 CDD Ubl_ubiquitin 1 76 - -
Cam02g1929 154 PANTHER UBIQUITIN 1 76 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Cam02g1929 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cam02g1929 154 FunFam NEDD8 protein 77 154 - -
Cam02g1929 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Cam02g1929 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0190 Cam-Chr2:2837975 Cam02g1929 Cam-Chr2:32383799 4.80E-09 dispersed
Cam02g1929 Cam-Chr2:32383799 Cam10g0530 Cam-Chr10:7806757 1.00E-64 dispersed
Cam02g1929 Cam-Chr2:32383799 Cam03g0492 Cam-Chr3:5860595 4.50E-65 transposed
Cam02g1929 Cam-Chr2:32383799 Cam01g2273 Cam-Chr1:35031784 4.50E-65 transposed
Cam02g1929 Cam-Chr2:32383799 Cam05g1639 Cam-Chr5:23750913 4.50E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1929 K12158 - csv:101214716 293.893