Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1933 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCATCGAAAGAAGCATAAACCTTCCGGAAACCCCACCACTGCTCCTGTTTCCACCGCCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTTGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCAATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTATTAGGGTTGTTGCTTGAAGCACTCGATCAGGAGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTTATCAACTACGATATTCCGAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTATTGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAGACTTCCCAAATAATTGGCATAATTTTGTGGTGGCTAAAATTGGTTGGTAAAGCCCATAGTCCAAGTGAAAGAAAGCAAAACCCATTTCCACAAACTCTTTGCAAATCTACCTGCTGCCATTGTATAACTTGGACTAATCTCAAAGCAATTTATATGTAA 1638 43.16 MDQEVLVDESFPLFSKSHRKKHKPSGNPTTAPVSTAVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLLKKRNKRRRKEKTSQIIGIILWWLKLVGKAHSPSERKQNPFPQTLCKSTCCHCITWTNLKAIYM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32441153 32446126 - CaPI482276_02g019330.1 Cam02g1933 121675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1933 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 418 IPR027417 -
Cam02g1933 545 Gene3D - 31 266 IPR027417 -
Cam02g1933 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Cam02g1933 545 CDD DEADc_DDX49 64 266 - -
Cam02g1933 545 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cam02g1933 545 Gene3D - 273 500 IPR027417 -
Cam02g1933 545 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cam02g1933 545 Pfam DEAD/DEAH box helicase 86 253 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam02g1933 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cam02g1933 545 SMART ultradead3 81 280 IPR014001 -
Cam02g1933 545 MobiDBLite consensus disorder prediction 16 36 - -
Cam02g1933 545 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 19 491 IPR050079 -
Cam02g1933 545 SMART helicmild6 319 400 IPR001650 -
Cam02g1933 545 Pfam Helicase conserved C-terminal domain 301 400 IPR001650 -
Cam02g1933 545 CDD SF2_C_DEAD 277 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0070 Cam-Chr1:1011505 Cam02g1933 Cam-Chr2:32441153 7.60E-97 dispersed
Cam01g2539 Cam-Chr1:36985620 Cam02g1933 Cam-Chr2:32441153 1.00E-33 dispersed
Cam02g1933 Cam-Chr2:32441153 Cam09g1041 Cam-Chr9:10770967 2.10E-64 dispersed
Cam02g1933 Cam-Chr2:32441153 Cam09g0075 Cam-Chr9:1589265 9.60E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1933 K14778 - csv:101215196 870.922