Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1937 ATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGTTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTTGAAAGCAGATCACTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAGAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCGGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 1203 42.81 MADNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTSSHHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDRVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32476223 32478090 + CaPI482276_02g019370.1 Cam02g1937 121679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1937 400 FunFam Metal tolerance protein 11 308 388 - -
Cam02g1937 400 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 32 396 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Cam02g1937 400 Pfam Dimerisation domain of Zinc Transporter 315 386 IPR027470 -
Cam02g1937 400 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 386 IPR036837 -
Cam02g1937 400 NCBIfam cation diffusion facilitator family transporter 110 386 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam02g1937 400 Gene3D Cation efflux protein transmembrane domain 109 305 IPR027469 -
Cam02g1937 400 FunFam Metal tolerance protein 11 112 305 - -
Cam02g1937 400 Gene3D Cation efflux protein, cytoplasmic domain 312 387 IPR036837 -
Cam02g1937 400 Pfam Cation efflux family 115 305 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam02g1937 400 SUPERFAMILY Cation efflux protein transmembrane domain-like 109 307 IPR027469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1937 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1402 Cam-Chr2:26715204 Cam02g1937 Cam-Chr2:32476223 2.10E-119 dispersed
Cam02g1937 Cam-Chr2:32476223 Cam03g1422 Cam-Chr3:28936300 2.00E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40