Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1942 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACTACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTATCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCCGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1092 51.1 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32518806 32526164 + CaPI482276_02g019420.1 Cam02g1942 121684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1942 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cam02g1942 363 MobiDBLite consensus disorder prediction 1 26 - -
Cam02g1942 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cam02g1942 363 MobiDBLite consensus disorder prediction 334 363 - -
Cam02g1942 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cam02g1942 363 MobiDBLite consensus disorder prediction 268 287 - -
Cam02g1942 363 Gene3D - 32 90 - -
Cam02g1942 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 201 IPR046955 GO:0003700(InterPro)
Cam02g1942 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cam02g1942 363 MobiDBLite consensus disorder prediction 318 333 - -
Cam02g1942 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cam02g1942 363 FunFam Myb family transcription factor 32 90 - -
Cam02g1942 363 MobiDBLite consensus disorder prediction 1 17 - -
Cam02g1942 363 MobiDBLite consensus disorder prediction 293 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1942 Cam-Chr2:32518806 Cam05g0378 Cam-Chr5:3480599 4.80E-41 dispersed
Cam03g0983 Cam-Chr3:15495667 Cam02g1942 Cam-Chr2:32518806 9.10E-18 transposed
Cam10g1350 Cam-Chr10:27048381 Cam02g1942 Cam-Chr2:32518806 1.20E-34 transposed
Cam10g1658 Cam-Chr10:30381440 Cam02g1942 Cam-Chr2:32518806 4.90E-11 transposed
Cam11g0985 Cam-Chr11:16711235 Cam02g1942 Cam-Chr2:32518806 1.70E-28 transposed
Cam02g1942 Cam-Chr2:32518806 Cam09g2321 Cam-Chr9:37620261 1.00E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51554 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1942 - - - 0.0