Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g1942 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACTACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTATCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCCGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA | 1092 | 51.1 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32518806 | 32526164 | + | CaPI482276_02g019420.1 | Cam02g1942 | 121684 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g1942 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cam02g1942 | 363 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 334 | 363 | - | - | |
Cam02g1942 | 363 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
Cam02g1942 | 363 | Gene3D | - | 32 | 90 | - | - | |
Cam02g1942 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 201 | IPR046955 | GO:0003700(InterPro) | |
Cam02g1942 | 363 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 318 | 333 | - | - | |
Cam02g1942 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cam02g1942 | 363 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cam02g1942 | 363 | MobiDBLite | consensus disorder prediction | 293 | 363 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1942 | Cam-Chr2:32518806 | Cam05g0378 | Cam-Chr5:3480599 | 4.80E-41 | dispersed | |
Cam03g0983 | Cam-Chr3:15495667 | Cam02g1942 | Cam-Chr2:32518806 | 9.10E-18 | transposed | |
Cam10g1350 | Cam-Chr10:27048381 | Cam02g1942 | Cam-Chr2:32518806 | 1.20E-34 | transposed | |
Cam10g1658 | Cam-Chr10:30381440 | Cam02g1942 | Cam-Chr2:32518806 | 4.90E-11 | transposed | |
Cam11g0985 | Cam-Chr11:16711235 | Cam02g1942 | Cam-Chr2:32518806 | 1.70E-28 | transposed | |
Cam02g1942 | Cam-Chr2:32518806 | Cam09g2321 | Cam-Chr9:37620261 | 1.00E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51554 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g1942 | - | - | - | 0.0 |