Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1947 TTATGGGAATTGGTTTGCAAAACATTTGATTTGGATGAGTTTGTTGTTTCCATAAAGATATCTAGAAGTAGTCGCACGTTTTATGTGTCTAGACTTCTGGATAGAGACAAGACTCCTGGGTGCAATTGGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCAGGGATTTTTTAGGTGCATTGGAGCGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTGAGCTACCGAGGAGCTGAATTTGAGATCGTGGAAGCACCACTAGAAGCTGAGATGATGGAAATGTATACATTAGCAGCTGAATTTTGGGCGAAGTTGCGGGTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAACCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTGAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCTTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTGCCTGAAAAGCCTGAAACTCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCATATCACTAAATGGGAGGGTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCCGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAAAGGAAAAAGTTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCATCCTGCATGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACCGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCAGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATCGATCAGCTTGGTGGCCCTGATAAGGTAGCGGAAATAACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAACGGAAAGGGTGTTACTTACCAGCCACGAAACTCGAAGGATGTGACTATGGAGATGGTCAACATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCCGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTCACAAATCTCGGTGGAGAACGCAGGGCTGGGTTGTCACTTAGTGCATATAATTATGACAGTGCTTATGGGAAAACGGCCTTGACGATGATGTACAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGATTCAATCCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACCGTACTTGCGTCTGGGAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCGCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTAAGAGGAAGTCCAAAGACAGTTCATGTTGATCCTGTCTCTGGGGCATCGACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATAACTTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTCTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTCCGCCCAGCTGTTGGGGAGTCACTAAGGGAAATGCCTCTCTCTGAGTTACGAAACAAATATCGAAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCACGGACCGAAGTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCATCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAAACAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCAAGGTTTAGCCTGGGTACAAGATGTAGATGCTTGA 2694 43.62 LWELVCKTFDLDEFVVSIKISRSSRTFYVSRLLDRDKTPGCNWDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRVRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEEERKKLLRCSCCEQLFHPACLDPPLLDTETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPDSIRDFIENAKAALNSVGIIRDTVLASGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGITWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMPLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDA 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32586614 32605716 + CaPI482276_02g019470.1 Cam02g1947 121689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1947 897 SMART PHD_3 319 365 IPR001965 -
Cam02g1947 897 Pfam P-loop containing NTP hydrolase pore-1 44 138 IPR039187 -
Cam02g1947 897 SUPERFAMILY FYVE/PHD zinc finger 309 370 IPR011011 -
Cam02g1947 897 Pfam C-terminal domain on Strawberry notch homologue 543 676 IPR026937 -
Cam02g1947 897 Pfam C-terminal domain on Strawberry notch homologue 408 541 IPR026937 -
Cam02g1947 897 ProSitePatterns Zinc finger PHD-type signature. 320 364 IPR019786 -
Cam02g1947 897 PANTHER STRAWBERRY NOTCH-RELATED 44 894 IPR026741 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0031490(PANTHER)|GO:0042393(PANTHER)
Cam02g1947 897 MobiDBLite consensus disorder prediction 252 272 - -
Cam02g1947 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 378 IPR013083 -
Cam02g1947 897 Pfam PHD-finger 320 364 IPR019787 -
Cam02g1947 897 MobiDBLite consensus disorder prediction 252 313 - -
Cam02g1947 897 MobiDBLite consensus disorder prediction 298 313 - -
Cam02g1947 897 ProSiteProfiles Zinc finger PHD-type profile. 317 367 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1947 K26273 - - csv:101218295 1628.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51556 PF13871 Helicase_C_4 8.10E-21 CL0023 Cam TR