Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1950 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTCACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGGCAGCGAAGGATCCGATACTTCCACCGACGTCGCCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGAAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAACGAGATTTAGAAATGCGTTTTTGGCGAATTATTCGTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACTTGTACCACTGATCTCGCGGATCTGTTCTCAATTGGGGAATGCAAAACCCCAACTAGCCCTTGTATCTATGATTACAGCTACACAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAGCTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTCGGCGGAGTCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATCGCAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCAAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTGTGCCTTTTCCGGCCTACAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1530 49.48 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLHGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVEAAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKTRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPTSPCIYDYSYTGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGVDGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIAISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFKFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSVPFPAYNIIGNILQQNHLWQFDFFRRKVGFAPSECV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32630317 32632051 - CaPI482276_02g019500.1 Cam02g1950 121692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1950 509 Gene3D Acid Proteases 115 323 IPR021109 -
Cam02g1950 509 PANTHER OS07G0603500 PROTEIN-RELATED 25 505 IPR051708 -
Cam02g1950 509 SUPERFAMILY Acid proteases 122 508 IPR021109 -
Cam02g1950 509 CDD pepsin_A_like_plant 129 508 IPR034161 -
Cam02g1950 509 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam02g1950 509 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam02g1950 509 PRINTS Pepsin (A1) aspartic protease family signature 386 397 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam02g1950 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam02g1950 509 Gene3D Acid Proteases 335 509 IPR021109 -
Cam02g1950 509 FunFam Aspartyl protease family protein 339 509 - -
Cam02g1950 509 ProSiteProfiles Peptidase family A1 domain profile. 130 504 IPR033121 -
Cam02g1950 509 Pfam Xylanase inhibitor N-terminal 130 323 IPR032861 -
Cam02g1950 509 Pfam Xylanase inhibitor C-terminal 357 504 IPR032799 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1950 Cam-Chr2:32630317 Cam11g1675 Cam-Chr11:29415274 9.60E-48 dispersed
Cam02g1950 Cam-Chr2:32630317 Cam01g0581 Cam-Chr1:6204976 2.00E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1950 - - - 0.0