Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam02g1952 | ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTGTTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACCTCCGTCATTGAAGATCAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGCGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAATCTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCGATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGACGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAATGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGATTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACAATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAGCTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCAAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCCGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAAGATGAATGTAAGTTCAGCGAGCTGTGTGATGTTGATTGGCAGTTTGTGCGTGGAGGGAGAACTTGACCTAGCCGTGGATGTTTTTCTTTATACACTAGAAGAAGGCTTTATGTTGATGCCTCGAATTTGTAATCAGCTGCTGAGCCGCCTTCTTCATTTGGAGGACAGAAAAGACCATGCTCTTGTTCTTATACATAGAATGGAGGCTTTTGGATATGATATTAATACTCTTCTCCACGACAGTACTAAGTTACTTCTTCATGATCATTGGGAATCATTGCAAGCTAAAGCTTTCATGCCTAAATACACGCGGCTGTCGCCAACTCACAACAAAGAATTGCCAAAATAA | 2433 | 39.75 | MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETVDPFEDGLEVISPHISSDVITSVIEDQSNPRLGFRLFIWSLRRKRLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKSSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDNASLQVMIQQLCESGLILKAYKLLMQLVEIGVLPDIRTYNILINGLCKNNNINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCKPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFKMNVSSASCVMLIGSLCVEGELDLAVDVFLYTLEEGFMLMPRICNQLLSRLLHLEDRKDHALVLIHRMEAFGYDINTLLHDSTKLLLHDHWESLQAKAFMPKYTRLSPTHNKELPK | 810 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 32647011 | 32649443 | - | CaPI482276_02g019520.1 | Cam02g1952 | 121694 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 269 | 299 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 234 | 268 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 444 | 470 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 409 | 442 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 340 | 373 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 562 | 596 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 199 | 233 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 306 | 338 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 375 | 407 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 130 | 163 | IPR002885 | - | |
| Cam02g1952 | 810 | NCBIfam | pentatricopeptide repeat | 528 | 560 | IPR002885 | - | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 297 | 400 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 490 | 524 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 371 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat family | 336 | 385 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat family | 161 | 210 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat family | 413 | 455 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat family | 238 | 280 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat family | 524 | 572 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat | 496 | 522 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat | 130 | 159 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat | 668 | 693 | IPR002885 | - | |
| Cam02g1952 | 810 | Pfam | PPR repeat | 306 | 334 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | IPR002885 | - | |
| Cam02g1952 | 810 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 194 | 470 | - | - | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 660 | 796 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 476 | 659 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 227 | 296 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 401 | 472 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | Gene3D | Tetratricopeptide repeat domain | 149 | 226 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 525 | 559 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 560 | 594 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Cam02g1952 | 810 | SUPERFAMILY | TPR-like | 163 | 617 | IPR011990 | GO:0005515(InterPro) | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 127 | 161 | IPR002885 | - | |
| Cam02g1952 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam02g1952 | - | - | - | 0.0 |