Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1954 ATGATACTACGCTCACAAGCGTCCTCTGTTTTCACAATTTCCTCTACAGTTACCGATAATCACACGTATAAGTATCACCGGCGGCAACTTCAGCTTCCTGTTTACGGCGGTGGAGCGAGTTTTCATGTTCGTGTTTCTAAAATTTTACTTCCGACGGCTGCGGTCACGGCCGGTTCCAGCGGCGGAAGTCTGACTAGAAGGAAATATAGGAATCGTTTTAACGACTTTAGGTCTTCTGCAAGTGCCTCCGATTTGTCCTCCTCGACTCAGCCGCCGGATATTCCAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCTGGACCTGATCTGAAAATGCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTCCTCGGACGATAAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGTCCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGTGACTTCTACAACGCTCTTGCTAACAAGGACCAAGAACAGTTCACTAAGCAACTCCTCTACTACCTAGGTGCCTTCGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCGGTCCATTATTGATAATCCAGACCAGCGGATCGTAGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTTTTCAATTCTACCGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCCCCGTTGTTTGTTGTTCTTCTTTTATATTCGATTGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATCTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAACGGTTTAGAAGTGCTGTTGAGAATTTAACTGAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTATCGCTACCTCATTCAGATTCTTCCAGCTGCTGTTGTTGCCCCAATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTTGGGGATTTTTCCCTCATTGTATATCAGTTTCAGGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATGTGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCTAGACAAACGCCTGAAATTATTGGAGATAGAGAATATGACTTTAGAGGCACCAAATGGAGCTACTTTGGTGAGAGACTTGGCGTTAATAGTTAAAGAAAAGGAGCATTTACTGGTAATGGGACCCAGTGGATGTGGCAAGACCTCATTGTTAAGAGTTTTGGCAGGTCTTTGGAATGTTGGAAGAGGAAAAATCACGTTTTATATAAAAGACTATCCGGAGCAGTTAGTTTCTCAAAATGGATTGCAAACCGAAGCACATACAGGAGAAGATGTATCCGAAGAAAATAGTAGACCACTCAACAAGAATTATCGAGGGATATTTTTCCTTCCTCAAAGACCATATATGGTTCTGGGTACACTACGTCAGCAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTCATGCTGAACCAAATGTATTCCCTTCCTTTTTGACAGGTGCGTCGAATATCAACAAGGTTGGCGAAAATCCTGATAAGCCAACAACGGATGACCTAATCAAGGTTCTGGATAAAGTGGGTCTTGACTACCTATTGACTCGTTTCAGTAGTCTGGACACGACTTGTGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTCTATTACTTTCAAGGCCAAAGTTAGTCCTGCTGGATGAGTCTACTAGTGCGTTAGACGAAGCGAATGAGGCACGTTTATACAAGCAAATCGCAGGTGCTGGAATTACATATATTAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCACATATCCAAGTTGTCTGATGGCAATCAACGCAATTGGAACATTGAACCCATTATTCGGGATGATTTTCGTTTGCAGGGGAGAATCTATTATATGAAGGATCTTAACGATGTGATATCGCCTCAAATGACGAGTAAAGAATATCAGAAAGTTACCAACGGTTATGTAGGTGAGGTTTCAACCATTTCGCTTGTCCTTTCCTTTAAGATTGAATTTGCTGCATAA 2448 42.69 MILRSQASSVFTISSTVTDNHTYKYHRRQLQLPVYGGGASFHVRVSKILLPTAAVTAGSSGGSLTRRKYRNRFNDFRSSASASDLSSSTQPPDIPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWSSDDKVQARWQLAAVFALSLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSRSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVVLLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTELLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHVESSPLLESNGSMALDKRLKLLEIENMTLEAPNGATLVRDLALIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGRGKITFYIKDYPEQLVSQNGLQTEAHTGEDVSEENSRPLNKNYRGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAEPNVFPSFLTGASNINKVGENPDKPTTDDLIKVLDKVGLDYLLTRFSSLDTTCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAGAGITYISIGHRRTLRNHHNSILHISKLSDGNQRNWNIEPIIRDDFRLQGRIYYMKDLNDVISPQMTSKEYQKVTNGYVGEVSTISLVLSFKIEFAA 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32661758 32669416 + CaPI482276_02g019540.1 Cam02g1954 121696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1954 815 CDD ABCD_peroxisomal_ALDP 483 751 - -
Cam02g1954 815 MobiDBLite consensus disorder prediction 79 110 - -
Cam02g1954 815 Gene3D - 475 783 IPR027417 -
Cam02g1954 815 MobiDBLite consensus disorder prediction 79 93 - -
Cam02g1954 815 Gene3D ABC transporter type 1, transmembrane domain 102 439 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam02g1954 815 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 425 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam02g1954 815 SMART AAA_5 508 777 IPR003593 GO:0016887(InterPro)
Cam02g1954 815 Pfam ABC transporter transmembrane region 2 134 390 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam02g1954 815 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam02g1954 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 773 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam02g1954 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 744 IPR027417 -
Cam02g1954 815 Pfam ABC transporter 500 703 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam02g1954 815 SUPERFAMILY ABC transporter transmembrane region 119 436 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam02g1954 815 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 84 757 IPR050835 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1954 Cam-Chr2:32661758 Cam10g0858 Cam-Chr10:19229908 3.60E-44 dispersed
Cam02g1954 Cam-Chr2:32661758 Cam10g1975 Cam-Chr10:33690544 5.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1954 - - - 0.0